Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TIGTYNEEGVNVDLYIPRKCHATNSLITSFDHSAVQIAIANVDPNGVIDGTTTTLCIAGYLRCQGESDHAINHLAIAKGI
VRIKTGKKP

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ova:AR 89 89 1.0000 1.0000 1.0000 3.38e-62
2 7ase:g 83 83 0.8202 0.8795 0.8795 1.25e-50
3 6az1:Y 88 87 0.7865 0.7955 0.8046 3.20e-48 8rxh:SY, 8rxx:SY
4 4v3p:ST 82 69 0.4270 0.4634 0.5507 4.13e-25
5 7qix:L 82 73 0.4157 0.4512 0.5068 3.56e-23 7qiz:BA
6 8auv:G 83 76 0.4270 0.4578 0.5000 1.13e-22 8b2l:G1
7 8r6f:V 81 73 0.4045 0.4444 0.4932 2.89e-22 8ip8:cb, 8ip9:cb, 8ipa:cb
8 8c3a:X 87 78 0.4045 0.4138 0.4615 5.59e-21 8c3a:DI, 8cq7:X, 8cq7:DI, 8cqw:X, 8cqw:DI, 8cre:X, 8cre:DI, 8oeq:X, 8oeq:DI, 7pzy:W, 7q08:W, 7q0f:W, 7q0p:W, 7q0r:W, 8q5i:W
9 8bqd:a 87 78 0.4045 0.4138 0.4615 1.97e-20 8bn3:D1, 8bqx:a, 8c83:a, 8cah:a, 8ccs:x, 8cf5:x, 8cku:x, 8cmj:x, 5dat:d1, 5dge:d1, 5dgv:d1, 6eml:a, 8eub:BV, 8evp:BV, 8evq:BV, 8evr:BV, 8evs:BV, 8evt:BV, 8ewb:BV, 8ewc:BV, 6fai:V, 6fyy:V, 6gq1:AL, 6gqv:AL, 6gsm:V, 6gsn:V, 8i7j:V, 5it7:V, 5it9:V, 3j77:21, 3j78:21, 3j80:V, 5juu:SB, 8k2d:SV, 8k82:SV, 5m1j:V2, 7mpi:BV, 7mpj:BV, 7n8b:BV, 5ndv:d1, 7nrd:Sa, 5obm:d1, 7osa:eS21, 7osm:eS21, 6q8y:a, 6rbd:V, 6rbe:V, 8rw1:V, 6s47:BW, 8s8d:V, 8s8e:V, 8s8f:V, 8s8i:V, 6snt:V, 6sv4:a, 6t4q:SV, 6t7t:SV, 6tnu:a, 4u3n:D1, 4u4n:D1, 4u4o:D1, 4u4y:D1, 4u50:d1, 4u53:D1, 4v6i:AT, 4v8y:AV, 4v8z:AV, 4v92:BV, 6xiq:AL, 6xir:AL, 6z6j:SV, 6z6k:SV, 7zrs:AV, 7zux:DV
10 5xxu:V 80 76 0.4045 0.4500 0.4737 4.55e-18
11 3j7a:Z 72 71 0.3708 0.4583 0.4648 7.06e-18 3jbn:Z, 3jbp:Z, 6okk:Z, 8tpu:SZ
12 7syl:W 83 77 0.4045 0.4337 0.4675 2.22e-17 6gz3:BV, 6olz:BV, 6om0:SV, 6om7:SV, 7oyb:V2, 7tor:AS21, 7wtw:V, 7wtz:V
13 6xu8:AV 82 77 0.3933 0.4268 0.4545 1.60e-16
14 4bts:AZ 97 82 0.3596 0.3299 0.3902 1.14e-15 4bts:BZ, 4bts:CZ, 4bts:DZ, 4v5o:AZ, 4v5o:BZ
15 6vw7:D 514 42 0.1910 0.0331 0.4048 4.4 6vw7:B, 6vw8:B, 6vw8:D
16 3ruq:A 516 55 0.2022 0.0349 0.3273 4.6 3kfb:A, 3kfb:B, 3kfb:C, 3kfb:D, 3kfb:E, 3kfb:F, 3kfb:G, 3kfb:H, 7rak:U, 7rak:A, 7rak:B, 7rak:C, 7rak:D, 7rak:E, 7rak:F, 7rak:G, 7rak:H, 7rak:I, 7rak:J, 7rak:K, 7rak:L, 7rak:M, 7rak:N, 7rak:O, 3ruq:B, 3ruq:C, 3ruq:D, 3rus:A, 3rus:B, 3rus:C, 3rus:D, 3ruv:A, 3ruv:B, 3ruv:C, 3ruv:D, 3ruw:A, 3ruw:B, 3ruw:C, 3ruw:D
17 3kfe:A 487 55 0.2022 0.0370 0.3273 5.2 3kfe:B, 3kfe:C, 3kfe:D, 3kfe:E, 3kfe:F, 3kfe:G, 3kfe:H, 3kfk:A, 3kfk:B, 3kfk:C, 3kfk:D, 5w74:A, 5w74:B, 5w74:C, 5w74:D, 5w74:E, 5w74:F, 5w74:G, 5w74:H
18 3v4l:A 386 35 0.1461 0.0337 0.3714 5.7 7a41:B, 6f7i:B, 6h4a:A, 4i1p:A, 4i1p:C, 7pav:B, 7paw:B, 3uo8:B, 3uo8:C, 3uoa:B, 3uoa:C, 3v4o:A, 8v4x:A, 8v4x:B, 8v4x:C, 8v4x:D, 8v4x:E, 8v4x:F, 6yn8:A, 6yn9:A
19 3n1u:A 182 48 0.1573 0.0769 0.2917 6.0
20 7vef:A 828 64 0.2022 0.0217 0.2812 7.1 8in9:A
21 8ajy:B 84 26 0.1124 0.1190 0.3846 8.5 8ajy:D
22 5ykt:A 453 26 0.1348 0.0265 0.4615 9.1 5ykt:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417