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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TIEKRYDFVFLFDVQDGNPNGDPDAGNLPRIDPQTGEGLVTDVCLKRKVRNFIQMTQNDEHHDIFIREKGILNNLIDEAH
EQENVKGKEKGEKTEAARQYMCSRYYDIRTFGAVMTTGKNAGQVRGPVQLTFSRSIDPIMTLEHSITMGRKFTVPYGLYR
CHGFISTHFAKQTGFSENDLELFWQALVNMFDHDHSAARGQMNARGLYVFEHSNNLGDAPADSLFKRIQVVKKDGVEVVR
SFDDYLVSVDDKNLEETKLLRKLGG

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8g9s:B 283 283 1.0000 0.9364 0.9364 0.0 8g9s:C, 8g9s:D, 8g9s:E, 8g9s:F, 8g9s:G, 8g9s:M, 8g9t:B, 8g9t:C, 8g9t:D, 8g9t:E, 8g9u:A, 8g9u:B, 8g9u:D, 8g9u:C, 8g9u:E, 8g9u:F, 8g9u:M, 8gaf:A, 8gaf:B, 8gaf:C, 8gaf:D, 8gaf:E, 8gaf:F, 8gaf:M, 8gam:A, 8gam:B, 8gam:C, 8gam:D, 8gam:E, 8gam:F, 8gam:M, 8gan:A, 8gan:B, 8gan:C, 8gan:D, 8gan:E, 8gan:F, 8gan:M
2 8g9t:F 261 265 0.9849 1.0000 0.9849 0.0 8g9t:H
3 8g9t:M 263 283 0.9245 0.9316 0.8657 5.14e-179
4 8dej:C 286 271 0.5472 0.5070 0.5351 1.35e-96 8dej:B, 8dej:D, 8dej:E, 8dej:F, 8dej:G, 8dej:H, 8dex:B, 8dex:C, 8dex:D, 8dex:E, 8dex:F, 8dex:G, 8dex:H, 8dfa:B, 8dfa:C, 8dfa:D, 8dfa:E, 8dfa:F, 8dfa:G, 8dfa:H, 8dfo:B, 8dfo:C, 8dfo:D, 8dfo:E, 8dfo:F, 8dfo:G, 8dfo:H, 8dfs:B, 8dfs:C, 8dfs:D, 8dfs:E, 8dfs:F, 8dfs:G, 8dfs:H, 7kha:B, 7kha:C, 7kha:D, 7kha:E, 7kha:F, 7kha:G, 7kha:H
5 4ipi:A 351 94 0.0943 0.0712 0.2660 0.021 4ipj:A, 6ppw:A, 6ppy:A, 6ppz:A, 2wqp:A, 1xuu:A, 1xuz:A
6 1utb:B 227 66 0.0755 0.0881 0.3030 1.7 1utb:A
7 4wvc:A 413 43 0.0604 0.0387 0.3721 2.0 4wvc:B
8 4wvb:A 394 43 0.0604 0.0406 0.3721 2.3
9 1zkp:A 251 79 0.0755 0.0797 0.2532 3.2 1zkp:B, 1zkp:C, 1zkp:D
10 3ut0:A 804 76 0.0868 0.0286 0.3026 4.0 3rrx:A, 3usz:A, 3ut0:B, 3ut0:C, 3ut0:D
11 6g76:B 269 119 0.1094 0.1078 0.2437 5.0
12 6bvc:A 154 45 0.0528 0.0909 0.3111 5.3 1bo4:A, 1bo4:B
13 3t0c:A 737 45 0.0566 0.0204 0.3333 5.8
14 3l92:A 159 71 0.0830 0.1384 0.3099 6.1
15 8kde:C 430 42 0.0453 0.0279 0.2857 8.7 8zee:C
16 6kaf:C 450 42 0.0453 0.0267 0.2857 9.1 8bd3:C, 8bd3:c, 6kac:C, 6kac:c, 6kad:C, 6kad:c, 6kaf:c, 7pi0:C, 7pi0:c, 7pi5:C, 7pi5:c, 7pin:C, 7pin:c, 7pin:C1, 7pin:c1, 7piw:C, 7piw:c, 7piw:C1, 7piw:c1, 7pnk:C, 7pnk:c, 8r2i:C
17 5xnp:A 361 52 0.0604 0.0443 0.3077 9.4 5xnp:B, 5xnq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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