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BioLiP
>protein
TIEIIKDLFEHLCGVRVHRTYEDDTGLWFDTSQGSKNGIMDYKLGFVTEVIYVPLLKQRTAEELQELQKKLPDYLFETLS
FPLRSLNQFYIKMSKSLNK

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6mjc:A 106 104 1.0000 0.9340 0.9519 1.70e-68 6mj8:B, 6mj8:A
2 6dei:A 107 105 0.7374 0.6822 0.6952 1.33e-48 6dei:B, 5v1a:A
3 3ho8:D 934 82 0.2525 0.0268 0.3049 3.5
4 3bg5:A 1137 82 0.2525 0.0220 0.3049 3.8 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C
5 4hnv:B 1033 82 0.2525 0.0242 0.3049 3.9 8gk8:D
6 3bg5:B 1074 82 0.2525 0.0233 0.3049 4.0 3bg5:D, 8gk8:C, 3hb9:B, 3hb9:D, 3hbl:B, 3hbl:D, 4hnt:B, 4hnt:D, 4hnu:B, 4hnu:D, 4hnv:D, 3ho8:A, 3ho8:C, 3ho8:B
7 2ebf:X 711 36 0.1515 0.0211 0.4167 4.8 2ebh:X
8 7rd1:J 942 67 0.2121 0.0223 0.3134 8.5 7rd1:L, 7rd1:A, 7rd1:C, 7rd1:D, 7rd1:F, 7rd1:B, 7rd1:E, 7rd1:G, 7rd1:H, 7rd1:K, 7rd1:I
9 3ubm:B 430 23 0.1212 0.0279 0.5217 9.6 3ubm:A, 3ubm:C, 3ubm:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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