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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQ
PEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPP
GAE

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ubk:A 709 162 0.9939 0.2285 1.0000 1.75e-110 4k2f:B, 4k2g:B, 3l91:B, 4m1j:C, 3srb:A, 3srb:B, 3src:B, 4wks:C, 4wkt:C, 4wku:B, 4wkv:C, 2wyc:A, 2wyc:B
2 4yf9:D 168 165 0.3620 0.3512 0.3576 4.12e-30 4yf9:A, 4yf9:G, 4yf9:J, 4yfa:A, 4yfa:D, 4yfa:G, 4yfa:J, 4yfb:D, 4yfb:A
3 1jvz:A 152 140 0.2331 0.2500 0.2714 5.79e-09
4 1gm9:A 207 110 0.2025 0.1594 0.3000 1.43e-05 1fxh:A, 1fxv:A, 1k7d:A, 1kec:A
5 7rep:A 764 112 0.1718 0.0366 0.2500 3.99e-04 4pel:B, 4pel:D, 4pel:F, 4pel:H, 4pem:B, 7reo:A
6 1nr9:A 211 50 0.1104 0.0853 0.3600 0.13 1nr9:B, 1nr9:C, 1nr9:D
7 6nvy:A 191 25 0.0736 0.0628 0.4800 0.47 6nvy:C
8 6nje:A 297 56 0.1411 0.0774 0.4107 0.70
9 3oqq:A 411 51 0.0982 0.0389 0.3137 3.8
10 4bxc:A 929 122 0.1779 0.0312 0.2377 5.2 4bxc:B, 3zgb:A, 3zgb:B, 3zge:A, 3zge:B
11 7xw2:A 725 58 0.0920 0.0207 0.2586 5.3
12 6laa:A 753 73 0.1411 0.0305 0.3151 6.1 6gii:A, 6ldl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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