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BioLiP
>protein
TGGSVHSSPAIGQDGTIYVGSNDHYLYAINPNGKLKWKFETGGSVHSSPAIGQDGTIYVGSNDHYLYAINPNGKLKWKFE

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8pro:A 80 80 1.0000 1.0000 1.0000 8.91e-55 8prm:B, 8prm:C, 8prm:D
2 7ax0:A 317 74 0.5375 0.1356 0.5811 8.44e-24 7ax2:A
3 7ax0:A 317 74 0.5375 0.1356 0.5811 8.44e-24 7ax2:A
4 7ax0:A 317 79 0.5250 0.1325 0.5316 2.40e-21 7ax2:A
5 7ax0:A 317 79 0.5250 0.1325 0.5316 2.40e-21 7ax2:A
6 7ax0:A 317 80 0.5250 0.1325 0.5250 1.31e-20 7ax2:A
7 7ax0:A 317 80 0.5250 0.1325 0.5250 1.31e-20 7ax2:A
8 7ax0:A 317 80 0.5125 0.1293 0.5125 1.13e-18 7ax2:A
9 7ax0:A 317 35 0.2750 0.0694 0.6286 1.06e-08 7ax2:A
10 7ax0:A 317 42 0.2625 0.0662 0.5000 3.22e-07 7ax2:A
11 8pzv:B 369 65 0.2500 0.0542 0.3077 1.31e-04 8pzu:B, 4xga:A
12 1flg:A 582 46 0.2250 0.0309 0.3913 0.025 1flg:B
13 1flg:A 582 84 0.3250 0.0447 0.3095 0.42 1flg:B
14 6l8a:C 429 82 0.3375 0.0629 0.3293 0.026
15 6l8a:C 429 55 0.2500 0.0466 0.3636 0.062
16 6l8a:F 457 55 0.2500 0.0438 0.3636 0.063 6l8a:E
17 6l8a:F 457 26 0.1500 0.0263 0.4615 0.47 6l8a:E
18 7wmk:A 557 47 0.1750 0.0251 0.2979 0.46
19 6zcv:A 562 45 0.2000 0.0285 0.3556 1.0 6zcw:A
20 6r3m:A 175 66 0.2625 0.1200 0.3182 4.0 2lro:A, 2lrp:A, 6r31:A, 1v0a:A
21 7wmd:A 531 46 0.1750 0.0264 0.3043 4.1
22 1yzg:A 168 30 0.1375 0.0655 0.3667 4.9
23 7pfs:A 916 45 0.1500 0.0131 0.2667 6.5 5ab0:A, 5ab2:A, 5j6s:A, 5k1v:A, 7nsk:A, 7nup:A, 7nup:B, 7p7p:A, 7sh0:A
24 7el9:A 1731 65 0.2125 0.0098 0.2615 6.6 7el9:D, 7elc:A
25 7elb:A 1937 65 0.2125 0.0088 0.2615 6.6 7ckm:A, 7elb:C, 6kld:A, 6kle:A, 6klh:A, 6klh:C
26 5na8:A 651 29 0.1250 0.0154 0.3448 6.6 5na6:A, 5na7:A, 5na8:B
27 5k3o:A 328 32 0.1125 0.0274 0.2812 7.6 5k3o:B, 5k3o:C, 5k3o:D, 5k45:A, 5k45:B, 5k45:C, 5k45:D, 5k4g:A, 5k4g:B, 5k4g:C, 5k4g:D, 5k4h:A, 5k4h:B, 5k4h:C, 5k4h:D, 5k4h:E, 5k4h:F, 5k4h:G, 5k4h:H, 6rue:A, 6rue:B, 6rue:C, 6rue:D, 6ruf:A, 6ruf:B, 6ruf:C, 6ruf:D
28 5k3o:A 328 32 0.1125 0.0274 0.2812 7.6 5k3o:B, 5k3o:C, 5k3o:D, 5k45:A, 5k45:B, 5k45:C, 5k45:D, 5k4g:A, 5k4g:B, 5k4g:C, 5k4g:D, 5k4h:A, 5k4h:B, 5k4h:C, 5k4h:D, 5k4h:E, 5k4h:F, 5k4h:G, 5k4h:H, 6rue:A, 6rue:B, 6rue:C, 6rue:D, 6ruf:A, 6ruf:B, 6ruf:C, 6ruf:D
29 8ci5:A 1258 28 0.1375 0.0087 0.3929 8.8
30 8ci5:A 1258 28 0.1375 0.0087 0.3929 8.8
31 5bp5:A 286 48 0.1875 0.0524 0.3125 9.9 5bp5:B, 5bqu:B, 5bqu:A, 4lo1:A, 4lo1:B, 4lo2:A, 4lo2:B, 4lo3:A, 4lo3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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