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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TFSGVVDIIVVRQPDDSLKSMPFHIRFNQNINIQITVNDKKIEDVFMLMLPEGACYFPEQKKLRPSSAILKKFNLKNGYN
KIQFIAESDLQGKQLIEGKIYLYNYDTKLVISDVDGTVTKSEWTHDDIAELYTNIQKNGYKMVYLSSRPLYFYNYTQGYL
KGIIQNGFTMPDGPILLSPDQEFKGALLKDLRRVFPEEVNPIFAGFGNRDTDATACLYAGVIIDNIFIINEQSQVEILGK
QEKSSYKKINEKIQELFPRLP

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6tzz:A 277 278 0.9923 0.9350 0.9317 0.0 6tzy:A, 6tzy:B, 6tzy:C, 6tzy:D, 6tzz:B
2 8pj9:A 1051 68 0.0728 0.0181 0.2794 0.14
3 2zue:A 628 41 0.0651 0.0271 0.4146 0.24 2zuf:A
4 4dwo:A 268 45 0.0651 0.0634 0.3778 0.40 3niw:A
5 6qw6:63 85 43 0.0421 0.1294 0.2558 1.1 6ah0:r, 6qx9:63, 8qxd:63, 8r08:63, 8r09:63, 8r0a:63, 8r0b:63, 8rm5:63
6 6ijb:B 538 47 0.0536 0.0260 0.2979 1.7 6ihk:B
7 3s6t:A 575 51 0.0651 0.0296 0.3333 4.9 3nsn:A, 3ozo:A, 3ozp:A, 3vtr:A, 3wmb:A, 3wmc:A, 5y0v:A, 5y1b:A
8 8i54:A 1113 50 0.0575 0.0135 0.3000 7.8
9 2rg4:A 206 55 0.0536 0.0680 0.2545 8.4 2rg4:B
10 8h9d:A 1114 21 0.0345 0.0081 0.4286 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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