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BioLiP
>protein
TELPGRTNAFRIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSK
QQYADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLDPIYVDVTQPSTALLRLR
RELASGQLERAGDNAAKVSLKLEDGSQYPLEGRLEFSEVSVDEGTGSVTIRAVFPNPNNELLPGMFVHAQL

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1t5e:C 231 231 1.0000 1.0000 1.0000 3.86e-169 1t5e:E, 1t5e:F, 1t5e:G, 1t5e:H, 1t5e:I, 1t5e:K, 1t5e:L
2 2k33:A 116 134 0.1818 0.3621 0.3134 2.56e-10
3 3lnn:A 341 244 0.2944 0.1994 0.2787 1.06e-09
4 5c22:B 267 59 0.0823 0.0712 0.3220 0.014
5 3hrd:A 420 72 0.0779 0.0429 0.2500 0.37 3hrd:E
6 8pn8:G 213 88 0.0952 0.1033 0.2500 0.41 8pn7:G, 8pn7:H, 8pn7:I, 8pn7:J, 8pn7:K, 8pn7:L, 8pn8:H, 8pn8:I, 8pn8:J, 8pn8:K, 8pn8:L, 6ybq:G, 6ybq:H, 6ybq:I, 6ybq:J, 6ybq:K, 6ybq:L
7 1iru:A 244 51 0.0736 0.0697 0.3333 0.64 1iru:O
8 5u84:B 353 54 0.0649 0.0425 0.2778 1.7 5u84:A
9 8cub:C 588 66 0.0952 0.0374 0.3333 3.4 8cub:A, 7r8a:A, 7r8b:A
10 3txa:A 583 31 0.0563 0.0223 0.4194 4.7 3tvy:A, 3tw0:A, 3tw0:B, 3tw0:C, 3tw0:D
11 8odq:D 410 65 0.0779 0.0439 0.2769 7.0 8odq:B
12 6fop:A 717 38 0.0649 0.0209 0.3947 7.8
13 6khm:K 312 63 0.0909 0.0673 0.3333 8.0 6khl:A, 6khl:B, 6khm:A, 6khm:B, 6khm:C, 6khm:D, 6khm:E, 6khm:F, 6khm:G, 6khm:H, 6khm:I, 6khm:J, 6khm:L, 6khm:M, 6khm:N, 6khm:O, 6khm:P, 6khm:Q, 6khm:R, 6khm:S, 6khm:T, 6khm:U, 6khm:V, 6khm:X, 6khm:Y, 6khm:W, 6khm:Z
14 8rth:A 666 25 0.0519 0.0180 0.4800 8.5 8rth:C, 8rth:E, 8rth:G, 8rth:I, 8rth:K
15 4koa:A 333 67 0.0909 0.0631 0.3134 9.6
16 2np0:A 1289 45 0.0693 0.0124 0.3556 9.8 1epw:A, 2etf:A, 2etf:B, 1f31:A, 1f82:A, 6g5f:B, 6g5g:B, 6g5k:A, 6g5k:B, 1g9a:A, 1g9b:A, 1g9c:A, 1g9d:A, 1i1e:A, 4kbb:A, 4kbb:B, 7na9:A, 2nm1:A, 6qns:A, 1s0b:A, 1s0c:A, 1s0d:A, 1s0e:A, 1s0f:A, 7t5f:A, 7t5f:D, 2xhl:A, 3zuq:A, 6zvm:AAA
17 6ogz:A 1082 85 0.1082 0.0231 0.2941 9.9 6ogy:A, 6oj6:P, 2r7r:A, 2r7s:A, 2r7t:A, 2r7u:A, 2r7v:A, 2r7w:A, 2r7x:A, 2r7x:B
18 6g21:A 504 34 0.0563 0.0258 0.3824 9.9 6g21:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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