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BioLiP
>protein
TEETITIDSISNGILNNLLTTLIQDIVARETT

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4wa6:G 71 32 1.0000 0.4507 1.0000 3.29e-15
2 3mhh:C 93 31 0.9688 0.3333 1.0000 2.01e-14 6aqr:C, 4fk5:C, 3kjl:E, 3kjl:H, 3m99:B, 3mhs:C, 6t9l:M, 4wa6:C, 4zux:W, 4zux:b, 4zux:g, 4zux:l
3 3vkh:A 3042 29 0.3125 0.0033 0.3448 2.7
4 5vxc:A 301 27 0.3125 0.0332 0.3704 2.9 5vxo:A, 5vxo:B, 5vxo:C
5 1g5q:A 174 17 0.3438 0.0632 0.6471 4.4 1g5q:D, 1g5q:G, 1g5q:L, 1g63:A, 1g63:B, 1g63:H, 1g63:C, 1g63:J, 1g63:D, 1g63:F, 1g63:E, 1g63:G, 1g63:I, 1g63:L, 1g63:K
6 3vkg:B 2853 29 0.3125 0.0035 0.3448 4.9
7 3vkg:A 2954 29 0.3125 0.0034 0.3448 4.9
8 3vkh:B 2908 29 0.3125 0.0034 0.3448 5.0
9 5tx1:N 473 17 0.3125 0.0211 0.5882 5.3 7tau:N
10 3qjg:A 171 17 0.3125 0.0585 0.5882 8.2 3qjg:C, 3qjg:B, 3qjg:D, 3qjg:E, 3qjg:F, 3qjg:G, 3qjg:I, 3qjg:H, 3qjg:J, 3qjg:L, 3qjg:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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