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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVS
ELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMDKCK
QDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYRELEQAIRGAD
AQEDLRWFRSTSGPGMPMNWPQFEEW

The query sequence (length=266) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3q84:G 287 285 1.0000 0.9268 0.9333 0.0 3hah:A, 3hah:B, 3q84:B, 3q84:N, 3qni:A, 3qni:B
2 3q0k:D 289 289 0.7481 0.6886 0.6886 2.01e-144 3aco:A, 3haj:A, 3haj:B, 3lll:A, 3lll:B, 3q0k:A, 3q0k:B, 3q0k:C
3 3qe6:B 286 283 0.5602 0.5210 0.5265 5.41e-117 3qe6:A
4 7aam:B 287 291 0.2143 0.1986 0.1959 2.84e-04 7aam:A
5 2q9c:A 304 87 0.0977 0.0855 0.2989 3.0 2cnw:D, 2cnw:E, 2cnw:F, 2iyl:D, 2j7p:D, 2j7p:E, 2q9b:A, 2xkv:D
6 3bga:A 1003 75 0.0752 0.0199 0.2667 3.9 3bga:B
7 7xin:A 470 108 0.0789 0.0447 0.1944 4.7 7xin:C, 7xin:E
8 7ok0:B 1109 38 0.0414 0.0099 0.2895 4.8 7oq4:B, 7oqy:B
9 8opt:A 783 47 0.0489 0.0166 0.2766 6.3 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
10 1tqh:A 242 41 0.0489 0.0537 0.3171 7.9
11 5vdk:A 260 33 0.0526 0.0538 0.4242 8.3
12 7zjs:A 929 45 0.0564 0.0161 0.3333 9.2 8k4d:A, 6qnx:A, 7zjs:C
13 6ujf:A 301 58 0.0752 0.0664 0.3448 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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