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BioLiP
>protein
TDRFKGDDDIDGKRAINYQILKNKGLTPKRNKDNRNSRVKKRKKYQKAQKKLKSVRAVYSGGQSGVYEGEKTGIKKGLTR
SVKFKN

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aju:UC 86 86 1.0000 1.0000 1.0000 7.14e-56 6zqd:UC, 6zqe:UC
2 7d4i:5H 95 95 0.9767 0.8842 0.8842 7.16e-51
3 7suk:NB 142 76 0.8837 0.5352 1.0000 3.76e-48 7ajt:UC, 7d5s:5H, 7d5t:5H, 7d63:5H, 6ke6:5H, 6lqp:5H, 6lqq:5H, 6lqr:5H, 6lqs:5H, 6lqt:5H, 6lqu:5H, 6lqv:5H, 5wlc:NB, 7wtl:UC, 6zqa:UC, 6zqb:UC, 6zqc:UC, 6zqf:UC, 6zqg:UC
4 7suk:NB 142 10 0.1163 0.0704 1.0000 2.6 7ajt:UC, 7d5s:5H, 7d5t:5H, 7d63:5H, 6ke6:5H, 6lqp:5H, 6lqq:5H, 6lqr:5H, 6lqs:5H, 6lqt:5H, 6lqu:5H, 6lqv:5H, 5wlc:NB, 7wtl:UC, 6zqa:UC, 6zqb:UC, 6zqc:UC, 6zqf:UC, 6zqg:UC
5 5oql:C 74 74 0.5349 0.6216 0.6216 7.45e-19 6rxt:UC, 6rxu:UC, 6rxv:UC, 6rxx:UC, 6rxy:UC, 6rxz:UC
6 7mqa:NB 103 75 0.4186 0.3495 0.4800 4.30e-14 7mq8:NB, 7mq9:NB
7 6zu5:SD0 213 71 0.2093 0.0845 0.2535 2.0
8 4wz9:B 887 20 0.1047 0.0101 0.4500 2.9 4wz9:A
9 7wvt:A 364 25 0.1047 0.0247 0.3600 6.3 7wwd:A, 7wwg:A
10 7ri3:C 583 50 0.1512 0.0223 0.2600 6.9 7ri3:A, 7ri3:B, 7ri3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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