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BioLiP
>protein
TDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFSCCLRLDDLAEFYRQCKSVGI
QETSSGYPRIHAPELQEWGGTMAALVDPDGTLLRLIQNE

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1niq:B 125 119 1.0000 0.9520 1.0000 5.97e-87 1ewj:A, 1ewj:B, 1ewj:C, 1ewj:D, 1ewj:E, 1ewj:F, 1ewj:G, 1ewj:H, 1niq:C
2 6p29:A 134 131 0.2605 0.2313 0.2366 0.001 6p29:B
3 3h2b:B 196 51 0.1429 0.0867 0.3333 0.98 3h2b:A
4 6t0f:A 431 36 0.1345 0.0371 0.4444 4.3 6t0f:B, 6t0f:C, 6t0f:D, 6t0g:A, 6t0h:A, 6t0j:A, 6t0k:A, 6t0l:A, 2wm4:A, 2wm5:A, 7zb9:A
5 5k2m:G 273 99 0.2017 0.0879 0.2424 5.0 5k2m:I, 5k2m:A, 5k2m:B, 5k2m:C, 5k2m:D, 5k2m:H, 5k2m:J
6 6enk:A 298 27 0.0924 0.0369 0.4074 8.1
7 7oop:M 810 30 0.1008 0.0148 0.4000 8.4 7opc:M, 7opd:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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