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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TDEEGVRTGKCSFPVKYLGHVEVDESRGMHICEDAVKRLKAERKFFKGFFGKTGKKAVKAVLWVSADGLRVVDEKTKDLI
VDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERK

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5njk:A 147 143 1.0000 0.9728 1.0000 2.36e-103 5njj:A, 5njj:C, 5njj:B, 5njj:D, 5njk:E, 5njk:C, 5njk:D, 5njk:B, 5njk:F
2 2nmb:A 147 143 0.6713 0.6531 0.6713 4.59e-64 1ddm:A, 5yi7:A, 5yi7:C, 5yi8:A
3 6itu:A 146 125 0.2727 0.2671 0.3120 4.21e-18
4 3so6:A 137 130 0.2867 0.2993 0.3154 1.01e-15
5 1ntv:A 152 120 0.2727 0.2566 0.3250 6.82e-09 1nu2:A, 1oqn:A, 1oqn:B
6 6ovf:A 154 117 0.2238 0.2078 0.2735 4.82e-07 1m7e:A, 1m7e:B, 1m7e:C, 6o5o:A, 6o5o:B, 6ovf:B
7 2qxf:A 433 75 0.1538 0.0508 0.2933 0.047
8 4js4:A 468 75 0.1538 0.0470 0.2933 0.048 3c94:A, 4hcb:A, 4hcb:B, 4hcc:A, 4hcc:B, 3hl8:A, 3hp9:A, 4jrp:A, 4jrp:B, 4jrq:A, 4jrq:B, 4js4:B, 4js5:A, 4js5:B
9 3d8f:A 127 60 0.1119 0.1260 0.2667 0.24 3d8f:C
10 8wm6:B 732 39 0.0909 0.0178 0.3333 2.0 8wmj:B, 8wmv:B, 8wmw:B
11 5koh:A 483 115 0.2168 0.0642 0.2696 3.9 5koh:C, 5koj:A, 5koj:C
12 6kr2:A 857 47 0.1049 0.0175 0.3191 4.8 6izx:A, 6izy:A, 6kr2:B, 6kr3:A
13 7ane:am 272 47 0.0839 0.0441 0.2553 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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