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BioLiP
>protein
TASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGA
LNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYA

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7acs:A 140 125 1.0000 0.8214 0.9200 9.45e-80 7act:A, 8iv3:D, 8j6x:A, 8j6x:D, 6vyo:A, 6vyo:B, 6vyo:C, 6vyo:D, 6wkp:B, 6wkp:C, 6wkp:D, 7xwz:A, 7xwz:B, 7xx1:A, 7xx1:B, 7xx1:C, 7xx1:D
2 6wkp:A 103 114 0.8957 1.0000 0.9035 1.08e-68
3 6lz8:B 130 123 0.6000 0.5308 0.5610 5.07e-42 6kl5:A, 6kl6:B
4 6lz8:D 112 114 0.5826 0.5982 0.5877 1.85e-41 7dyd:D, 6kl5:C, 6kl6:D, 6lnn:D, 6lz6:D
5 4kxj:A 135 124 0.4783 0.4074 0.4435 3.24e-26 4li4:A, 4lm7:A, 4lm9:A, 4lmc:A, 4lmt:A
6 3lya:A 318 34 0.1217 0.0440 0.4118 2.0
7 6omp:A 356 72 0.2000 0.0646 0.3194 4.8 6omp:B, 6omq:A, 6omq:B, 6omr:A, 6omr:B
8 6v8o:O 384 94 0.2174 0.0651 0.2660 5.9 6v92:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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