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BioLiP
>protein
SYNGIGLKSAKGSSTSGHVQRSLASRPLAVQKQIETHMEKREIEVQVSELRDRLEEEETLSEEQIDKKCEALRAKLTNEW
Q

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6bk8:K 82 81 0.9383 0.9268 0.9383 6.58e-48 7b9v:R, 6exn:R
2 5mps:R 108 103 0.9753 0.7315 0.7670 1.47e-34 5lj3:R, 5lj5:R, 5mq0:R
3 8c6j:R 76 76 0.3704 0.3947 0.3947 6.33e-07 8ch6:q, 9fmd:SR, 8i0r:U, 8i0s:U, 8i0t:U, 8i0u:U, 8i0v:U, 8i0w:U, 7qtt:q, 7w59:U, 7w5a:U, 7w5b:U
4 6ff4:S 34 23 0.1728 0.4118 0.6087 4.23e-05 6ff7:S, 5mqf:S, 6zym:S
5 3q10:A 285 38 0.1852 0.0526 0.3947 2.4 3q10:B, 3q10:C, 3q10:D, 3q12:A, 3q12:B, 3q12:C, 3q12:D
6 8uwb:C 309 42 0.1481 0.0388 0.2857 3.2 7cun:Q, 3dw8:C, 3dw8:F, 3fga:C, 4i5l:F, 4i5l:C, 4i5n:F, 4i5n:C, 2iae:C, 2iae:F, 2ie3:C, 2ie4:C, 7k36:C, 3k7v:C, 3k7w:C, 4lac:C, 2npp:C, 2npp:F, 6nts:C, 2nyl:C, 2nyl:F, 2nym:C, 2nym:F, 3p71:C, 7pks:q, 8rbx:q, 8rbz:q, 8rc4:q, 8so0:C, 8ttb:C, 8twi:C, 8u1x:C, 8u89:C, 8uwb:F, 5w0w:F, 7ycx:Q
7 5m8e:A 323 48 0.1605 0.0402 0.2708 3.3 5m8e:B
8 8eno:C 407 20 0.1235 0.0246 0.5000 3.3 1l5h:A
9 8enl:C 382 20 0.1235 0.0262 0.5000 3.6
10 3qax:B 235 31 0.1481 0.0511 0.3871 3.7 3n26:A, 3qax:A
11 4xpi:A 479 20 0.1235 0.0209 0.5000 4.9 2afh:A, 2afh:C, 2afi:A, 2afi:C, 2afi:I, 2afi:K, 6bbl:A, 6bbl:C, 8bts:A, 8bts:C, 8bts:H, 8bts:J, 5bvg:A, 5bvg:C, 5bvh:A, 5bvh:C, 6cdk:A, 6cdk:C, 8crs:A, 8crs:C, 5cx1:A, 5cx1:C, 5cx1:E, 5cx1:G, 5cx1:I, 5cx1:K, 5cx1:M, 5cx1:O, 8dbx:A, 8dbx:C, 8dby:A, 8dby:C, 8dfc:A, 8dfc:C, 8dfd:A, 8dfd:C, 8dpn:A, 8dpn:C, 8e3t:A, 8e3t:C, 8e3u:A, 8e3u:C, 8e3v:A, 8e3v:C, 8enl:A, 8enm:A, 8enm:C, 8enn:A, 8enn:C, 8eno:A, 1fp4:A, 1fp4:C, 1g20:A, 1g20:C, 1g21:A, 1g21:C, 7jrf:A, 7jrf:C, 3k1a:A, 3k1a:C, 1m1n:A, 1m1n:C, 1m1n:E, 1m1n:G, 1m1y:A, 1m1y:C, 1m1y:I, 1m1y:K, 1m34:A, 1m34:C, 1m34:I, 1m34:K, 7mci:A, 7mci:C, 2min:A, 2min:C, 3min:A, 3min:C, 1n2c:A, 1n2c:C, 4nd8:A, 4nd8:C, 6o7l:A, 6o7l:C, 6o7m:A, 6o7m:C, 6o7n:A, 6o7n:C, 6o7o:A, 6o7o:C, 6o7p:A, 6o7p:C, 6o7q:A, 6o7q:C, 6o7r:A, 6o7r:C, 6o7s:A, 6o7s:C, 6op1:A, 6op1:C, 6op2:A, 6op2:C, 6op3:A, 6op3:C, 6op4:A, 6op4:C, 8p8g:A, 8p8g:C, 4tku:A, 4tku:C, 4tkv:A, 4tkv:C, 3u7q:A, 3u7q:C, 6ug0:A, 6ug0:C, 7ut6:A, 7ut6:C, 7ut7:A, 7ut7:C, 7ut8:A, 7ut8:C, 7ut9:A, 7ut9:C, 7uta:A, 7uta:C, 5vq4:A, 5vq4:C, 6vxt:A, 6vxt:C, 4wna:A, 4wna:C, 4wza:A, 4wza:C, 4wzb:A, 4wzb:C, 4xpi:C
12 3kxw:A 572 25 0.1358 0.0192 0.4400 5.6 3lnv:A
13 6vh5:D 282 52 0.1852 0.0532 0.2885 5.7 6vh5:A, 6vh5:C, 6vh5:B
14 8c6j:D 123 56 0.2222 0.1463 0.3214 5.8 9fmd:1, 6icz:X, 6qdv:D, 7w5a:2, 7w5b:2, 5xjc:X
15 3ict:A 557 24 0.1358 0.0197 0.4583 7.0 3icr:A, 3icr:B, 3ics:A, 3ics:B, 3ict:B
16 5zmu:D 287 32 0.1358 0.0383 0.3438 7.6 5zmu:A, 5zmu:B, 5zmu:C, 5zmy:A, 5zmy:B, 5zmy:C, 5zmy:D, 5zmy:E, 5zmy:F, 5zmy:G, 5zmy:H
17 3gxa:C 244 37 0.1358 0.0451 0.2973 7.7 6dzx:A, 6dzx:B, 6dzx:C, 6dzx:D, 6dzx:E, 6dzx:F, 3gxa:A, 3gxa:B, 3gxa:D, 3gxa:E, 3gxa:F, 3ir1:A, 3ir1:B, 3ir1:C, 3ir1:D, 3ir1:E, 3ir1:F, 6oja:A, 6oja:B, 6oja:C, 6oja:D, 6oja:E, 6oja:F
18 1ex7:A 186 30 0.1605 0.0699 0.4333 8.1 1gky:A
19 8fgw:C 1342 41 0.1728 0.0104 0.3415 8.4 8fh3:C
20 8ckb:H004 705 37 0.1728 0.0199 0.3784 8.9 8ckb:H001, 8ckb:H006, 8ckb:H007, 8ckb:H008, 8ckb:H009, 8ckb:H010, 7qoi:FA, 7qoi:FD, 7qoi:FF, 7qoi:FG, 7qoi:FH, 7qoi:FI, 7qoi:FJ
21 8ckb:H003 684 37 0.1728 0.0205 0.3784 9.5 8ckb:H002, 8ckb:H011, 8ckb:H012, 7qoi:FB, 7qoi:FC, 7qoi:FK, 7qoi:FL

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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