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BioLiP
>protein
SYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDE

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8osb:B 66 66 1.0000 1.0000 1.0000 6.02e-43
2 2ypa:A 67 61 0.4848 0.4776 0.5246 1.44e-15 2ypb:A
3 2ql2:B 59 59 0.4242 0.4746 0.4746 7.22e-12 2ql2:D
4 7z5i:A 56 51 0.3030 0.3571 0.3922 2.71e-07 7z5i:B, 7z5k:A, 7z5k:B
5 1mdy:A 68 56 0.3182 0.3088 0.3750 4.38e-07 1mdy:B, 1mdy:C, 1mdy:D
6 1hlo:A 80 51 0.2576 0.2125 0.3333 7.62e-06
7 5eyo:C 88 55 0.2576 0.1932 0.3091 1.18e-05 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
8 5i50:B 96 53 0.3485 0.2396 0.4340 0.002 5i50:A, 1nkp:A, 1nkp:D
9 5gnj:B 77 43 0.2727 0.2338 0.4186 0.006 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
10 6od3:A 62 37 0.2273 0.2419 0.4054 0.100 6od3:B, 6od3:H, 6od3:E, 6od3:F, 6od4:A, 6od4:B, 6od5:A, 6od5:B, 6od5:C, 6od5:D, 8osb:A
11 2ypb:B 74 55 0.3182 0.2838 0.3818 0.26 2ql2:A, 2ql2:C, 2ypa:B
12 8ia3:E 111 59 0.3182 0.1892 0.3559 0.42 8ia3:A, 8ia3:B, 8ia3:F
13 8ow1:B 116 50 0.2424 0.1379 0.3200 2.1 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
14 1an4:A 65 59 0.3182 0.3231 0.3559 2.1 1an4:B
15 2qgi:A 248 41 0.2121 0.0565 0.3415 2.5 2qgi:B
16 5l6v:I 400 32 0.1212 0.0200 0.2500 3.6
17 6r8u:A 425 32 0.1212 0.0188 0.2500 3.6 5l6s:C, 5l6s:G, 5l6s:I, 5l6s:L, 5l6v:A, 5l6v:E, 5l6v:G, 5l6v:H, 5l6v:J, 5l6v:K, 5l6v:N, 5l6v:B, 5l6v:C, 5l6v:D, 5l6v:F, 5l6v:L, 5l6v:M, 5l6v:O, 5l6v:P, 6r8b:D, 6r8b:B, 6r8b:A, 6r8b:C, 6r8u:B, 6r8u:D, 6r8u:C, 6shj:D, 6shj:A, 6shj:B, 6shj:C, 6shn:D, 6shn:C, 6shq:A, 6shq:D, 6shq:C, 6shq:B, 6si8:A, 6si8:B, 6si8:D, 6si8:C
18 6n1x:A 377 26 0.1364 0.0239 0.3462 9.6 6d9t:A
19 2y7d:D 278 23 0.1212 0.0288 0.3478 9.7 2y7d:A, 2y7d:B, 2y7d:C, 2y7e:A, 2y7e:B, 2y7f:A, 2y7f:B, 2y7f:C, 2y7f:D, 2y7g:A, 2y7g:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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