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BioLiP
>protein
SVYFDLEDLGNTTGQWDSYGSDAPSPYNPLQSKLFETFAAPFTKRGLLLKFLILGGGSTLAYLSATASGDILPITRGPQQ
PPKLGPRGKI

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xk8:H 90 90 1.0000 1.0000 1.0000 8.58e-61 4xk8:h
2 7wfd:AH 95 90 0.8667 0.8211 0.8667 3.72e-54 8j6z:H, 8j7a:H, 8j7b:H, 2o01:H, 7wfe:BH, 7wg5:AH, 2wsc:H, 2wse:H, 2wsf:H
3 6yez:H 93 87 0.8778 0.8495 0.9080 2.45e-52 7dkz:H, 5l8r:H, 3lw5:H, 4rku:H, 4y28:H, 6yac:H, 6zoo:H, 6zxs:H
4 8htu:H 95 89 0.6222 0.5895 0.6292 1.71e-38 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
5 8wgh:H 90 90 0.8000 0.8000 0.8000 3.63e-32
6 5zji:H 95 90 0.8333 0.7895 0.8333 4.89e-32 8bcv:H, 8bcw:H
7 6zzx:H 94 90 0.4667 0.4468 0.4667 4.92e-22 6zzy:H
8 7yca:H 96 91 0.4556 0.4271 0.4505 1.08e-14
9 6igz:H 88 87 0.4222 0.4318 0.4368 5.41e-13
10 7d0j:H 100 91 0.3667 0.3300 0.3626 1.02e-12 7dz7:H, 7dz8:H, 8h2u:H, 6ijo:H
11 6sl5:H 92 90 0.3778 0.3696 0.3778 1.43e-11
12 5why:A 418 45 0.1778 0.0383 0.3556 0.66
13 5t04:A 458 19 0.1000 0.0197 0.4737 4.5 4grv:A
14 2wya:A 460 31 0.1444 0.0283 0.4194 5.6 2wya:B, 2wya:C, 2wya:D
15 5v1d:A 193 88 0.2778 0.1295 0.2841 6.3
16 5i4e:A 959 21 0.1222 0.0115 0.5238 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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