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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVPTVLQKILARKAEEVAERRARVNLAEVERLARSADAPRGFANALLERAKRKEPAVIAEIKKASPSKGVLREHFVPAEI
ARSYEAGGAACLSVLTDVDFFQGADAYLKEARAACALPVIRKDFMIDPYQIVEARAIGADCILLIVSALDDVLMAELAAT
AKSVGLDVLVEVHDGTELERALKTLDTPLVGINNRNLHTFEVSLETTLDLLPEIPRDRLVVTESGILNRADVELMEVSEV
YAFLVGEAFMRADDPGLELKRLFFQ

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6y88:B 265 265 1.0000 1.0000 1.0000 0.0 6y88:A, 6y88:C, 6y88:D, 6y88:E, 6y88:F, 6y88:G, 6y88:H
2 3t44:A 259 254 0.3811 0.3900 0.3976 3.65e-45 3t40:A, 3t55:A, 3t78:A
3 1pii:A 452 262 0.4038 0.2367 0.4084 9.80e-44 1jcm:P
4 7etx:A 472 264 0.3849 0.2161 0.3864 1.22e-39 7ety:A, 7ety:B
5 1vc4:B 254 257 0.3887 0.4055 0.4008 8.67e-37
6 3uz5:A 247 207 0.2415 0.2591 0.3092 2.61e-21 3uz5:B, 3uzj:A, 3uzj:B
7 3nz1:A 249 207 0.2302 0.2450 0.2947 4.62e-21 4a29:A, 4a2s:A, 1a53:A, 8foq:A, 1igs:A, 4iww:A, 4iww:B, 1juk:A, 5k7j:A, 5k7j:B, 1lbf:A, 1lbl:A, 6nw4:A, 4ou1:A, 3ud6:A, 3uxd:A, 3uxd:B
8 4a2r:A 247 207 0.2340 0.2510 0.2995 5.15e-21 5an7:A, 4pa8:A, 8xyn:A, 8xyn:B
9 7pao:9 682 56 0.0755 0.0293 0.3571 1.5 7paq:9, 7par:9, 7pib:9, 7pis:9, 7pit:9
10 1xco:D 325 77 0.0679 0.0554 0.2338 3.9 1xco:A, 1xco:B, 1xco:C, 1xco:E, 1xco:F
11 6vc6:B 440 69 0.0792 0.0477 0.3043 5.8 6vc6:A, 6vc6:C, 6vc6:D
12 6k13:A 332 119 0.1208 0.0964 0.2689 6.3 6k13:B
13 8ajp:A 199 52 0.0642 0.0854 0.3269 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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