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BioLiP
>protein
SVPTKLEVVAATPTSLLVSWDAPAVTVVFYDITYGETGGNSPVQEFTVPGSKSTATISGLSPGVDYTITVYAKYLFWSGY
SSPISINYRTE

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8f0m:B 91 91 1.0000 1.0000 1.0000 2.08e-60
2 5v7p:D 95 92 0.8462 0.8105 0.8370 4.92e-45
3 5a43:C 96 93 0.8681 0.8229 0.8495 5.79e-44
4 4lxo:A 184 91 0.8022 0.3967 0.8022 8.93e-43 4lxo:B
5 6d0j:C 90 91 0.8132 0.8222 0.8132 1.01e-42 6d0k:C, 6d0n:C
6 6ux8:B 86 89 0.8022 0.8488 0.8202 1.26e-42
7 3ch8:A 190 90 0.8022 0.3842 0.8111 1.55e-41 2qbw:A
8 4jmh:A 200 90 0.7912 0.3600 0.8000 1.43e-40 4jmg:A
9 5mtm:B 92 91 0.7692 0.7609 0.7692 2.53e-39
10 8vxu:E 90 92 0.7912 0.8000 0.7826 6.20e-39 7szt:F, 8tgy:C, 8tgy:D, 6wk9:C, 6wk9:G
11 7l0f:H 94 98 0.8022 0.7766 0.7449 9.90e-39 7l0f:F, 7l0f:B, 7l0f:M, 7l0g:C, 7l0g:D, 7l0g:F, 7l0g:H
12 3csb:A 464 92 0.7802 0.1530 0.7717 3.17e-37
13 6x39:A 100 77 0.3077 0.2800 0.3636 2.27e-04
14 2mnu:A 93 88 0.3187 0.3118 0.3295 2.81e-04
15 6gvk:A 201 78 0.2967 0.1343 0.3462 5.25e-04 6gvl:A
16 6gvk:A 201 72 0.2308 0.1045 0.2917 0.088 6gvl:A
17 1eba:A 212 72 0.1868 0.0802 0.2361 0.52 1eba:B, 1ebp:A, 1ebp:B
18 2adc:A 208 19 0.1099 0.0481 0.5263 2.6
19 3poa:A 96 44 0.1319 0.1250 0.2727 3.4
20 3mdj:C 819 70 0.1868 0.0208 0.2429 4.0 3mdj:A
21 3hbg:A 353 47 0.1868 0.0482 0.3617 5.0
22 4xyj:A 768 25 0.1209 0.0143 0.4400 6.3 4rh3:A, 4rh3:B, 4rh3:C, 4rh3:D, 4u1r:A, 4u1r:B, 4u1r:C, 4u1r:D, 4wl0:A, 4wl0:B, 4wl0:C, 4wl0:D, 4xyj:B, 4xyj:C, 4xyj:D, 4xyj:E, 4xyj:F, 4xyj:G, 4xyj:H, 4xyk:A, 4xyk:B, 4xyk:C, 4xyk:D, 4xz2:A, 4xz2:B, 4xz2:C, 4xz2:D
23 2fgy:A 471 26 0.1209 0.0234 0.4231 9.9 2fgy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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