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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAK
PTRLNVFKNDQDTWDYTNP

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2mqp:A 118 99 1.0000 0.8390 1.0000 5.66e-71 7evr:A, 7evr:C
2 7evs:A 101 99 0.7273 0.7129 0.7273 1.14e-53 7evs:B
3 2adb:A 127 96 0.4242 0.3307 0.4375 1.29e-20 3zzy:A, 3zzy:B, 3zzz:A, 3zzz:B
4 2adc:A 208 100 0.3030 0.1442 0.3000 9.54e-05
5 6dg0:B 84 72 0.2121 0.2500 0.2917 0.004 6dg0:A
6 4qqb:A 169 70 0.2424 0.1420 0.3429 0.030 1b7f:A, 1b7f:B, 4qqb:B
7 7b9v:Y 88 61 0.1717 0.1932 0.2787 0.19 6bk8:r, 7dco:p, 6exn:Y, 6g90:Y, 5gmk:a, 6j6g:a, 6j6h:a, 6j6n:a, 6j6q:a, 5lj3:Y, 5lj5:Y, 5mq0:Y, 5nrl:Y, 7oqb:Y, 7oqe:Y, 5wsg:X, 5y88:p, 5ylz:p, 5zwm:p, 5zwo:p
8 6hip:A 104 45 0.1717 0.1635 0.3778 0.68 6hip:B, 5lso:A, 5lso:B, 2peh:A, 2peh:B
9 1rk8:A 87 23 0.1111 0.1264 0.4783 1.4
10 5det:B 94 37 0.1515 0.1596 0.4054 1.9 5det:A
11 3llx:A 373 38 0.1010 0.0268 0.2632 3.1
12 3lqv:B 115 69 0.1919 0.1652 0.2754 3.3 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
13 2oo0:A 419 65 0.2121 0.0501 0.3231 3.6 5bwa:A, 7odc:A, 2on3:A, 2on3:B, 2oo0:B, 7s3f:A, 7s3f:B, 7s3g:A, 7s3g:B, 7u6p:A, 7u6p:B, 7u6u:A, 7u6u:B, 4zgy:A
14 2xb2:D 89 22 0.0909 0.1011 0.4091 5.9 2xb2:Z
15 2x1f:A 94 71 0.2020 0.2128 0.2817 6.0 2km8:B, 2x1a:A
16 1rjl:C 95 25 0.1111 0.1158 0.4400 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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