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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
STVEQVLEYVKSNNVKFMRFQFVDILGVPKNVAFPIKAGEKGIEELRDVLENGLYFDGSSIEGFVGINESDMMLKPDLST
FSVLPWRPSEKSVARVICDVYTTKGKPFEGDPRGCLKRVMEEFKKEFNGEYFVGPEPEFFLLKKDPHNPHKYIPADDGGY
FDLEPMDEAPDIRRDIVFALENLGFHVEASHHEVAPGQHEVDFKFDDALKTADSVITFKTTIKTIAEQHGLKATFMPKPF
FGMNGSGMHCHQSIWLNGEPSFYDENAPYQLSETCMNYVAGILKHAKAIVAITNPTVNSYKRLVPGYEAPVNIAWANSNR
SAIIRVPAARGKGTRIEFRAPDPSCNPYLAFTVMLAAGLDGVKNKLDAPEPVERNIFAMSEAEKKELGIESVPANLKAAL
DELENNDVLKNALGKHIFESFLEIKNAEWDSFRTSVTDWETTAYLKI

The query sequence (length=447) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ooo:A 447 447 1.0000 1.0000 1.0000 0.0 8ooo:L, 8ooo:B, 8ooo:H, 8ooo:C, 8ooo:J, 8ooo:D, 8ooo:F, 8ooo:E, 8ooo:G, 8ooo:I, 8ooo:K, 8ooq:A, 8ooq:L, 8ooq:B, 8ooq:H, 8ooq:C, 8ooq:J, 8ooq:D, 8ooq:F, 8ooq:E, 8ooq:G, 8ooq:I, 8ooq:K, 8ooq:P, 8ooq:c, 8ooq:Q, 8ooq:Y, 8ooq:S, 8ooq:a, 8ooq:T, 8ooq:V, 8ooq:U, 8ooq:X, 8ooq:Z, 8ooq:b
2 4s0r:D 447 444 0.5503 0.5503 0.5541 0.0 4lnf:A, 4lnf:B, 4lnf:C, 4lnf:D, 4lnf:E, 4lnf:F, 4lnf:G, 4lnf:H, 4lnf:I, 4lnf:J, 4lnf:K, 4lnf:L, 4lni:A, 4lni:B, 4lni:C, 4lni:D, 4lni:E, 4lni:F, 4lni:G, 4lni:H, 4lni:I, 4lni:J, 4lni:K, 4lni:L, 4lnk:A, 4lnk:B, 4lnk:C, 4lnk:D, 4lnk:E, 4lnk:F, 4lnn:A, 4lnn:B, 4lnn:C, 4lnn:D, 4lnn:E, 4lnn:F, 4lnn:G, 4lnn:H, 4lnn:I, 4lnn:J, 4lnn:K, 4lnn:L, 4lno:A, 4lno:B, 4lno:C, 4lno:D, 4lno:E, 4lno:F, 4s0r:A, 4s0r:C, 4s0r:F, 4s0r:G, 4s0r:I, 4s0r:E, 4s0r:L, 4s0r:M, 4s0r:J, 4s0r:K, 4s0r:N, 4s0r:B, 4s0r:H, 7tfc:B, 7tfc:C, 7tfc:Q, 7tfc:R, 7tfc:F, 7tfc:G, 7tfc:H, 7tfc:P, 7tfc:O, 7tfc:S, 7tfc:I, 7tfc:N, 7tfc:T, 7tfc:A
3 7tfa:B 441 446 0.5593 0.5669 0.5605 0.0 7tdp:A, 7tdp:C, 7tdp:B, 7tfa:L, 7tfa:Q, 7tfa:E, 7tfa:F, 7tfa:J, 7tfa:K, 7tfa:W, 7tfa:R, 7tfa:S, 7tfa:T, 7tfa:X, 7tfb:B, 7tfb:S, 7tfb:D, 7tfb:U, 7tfb:F, 7tfb:Y, 7tfb:J, 7tfb:K, 7tfb:Z, 7tfb:L, 7tfb:b, 7tfb:N, 7tfb:V, 7tfb:T, 7tfd:B, 7tfd:E, 7tfd:F, 7tfd:J, 7tfd:K, 7tfd:L, 7tfd:Q, 7tfd:R, 7tfd:S, 7tfd:T, 7tfd:W, 7tfd:X
4 8oox:B 438 446 0.5526 0.5639 0.5538 3.77e-176 8oow:A, 8oow:B, 8oow:C, 8oow:D, 8oow:E, 8oow:F, 8oow:G, 8oow:H, 8oow:I, 8oow:J, 8oow:K, 8oow:L, 8oox:A, 8ooz:A, 8ooz:B, 8ooz:C, 8ooz:D, 8ooz:E, 8ooz:F, 8ooz:K, 8ooz:G, 8ooz:H, 8ooz:I, 8ooz:J, 8ooz:L
5 8ufj:B 444 448 0.5391 0.5428 0.5379 7.04e-175 8tfb:A, 8tfb:B, 8tfb:C, 8tfb:D, 8tfb:L, 8tfb:M, 8tfb:O, 8tfb:P, 8tfb:Q, 8tfb:V, 8tfb:X, 8tfb:Y, 8tfk:A, 8tfk:B, 8tfk:C, 8tfk:D, 8tfk:E, 8tfk:F, 8tfk:G, 8tfk:H, 8tfk:I, 8tfk:J, 8tfk:K, 8tfk:L, 8ufj:A, 8ufj:C
6 7tdv:C 443 445 0.5235 0.5282 0.5258 7.42e-174 7tdv:A, 7tdv:D, 7tdv:E, 7tdv:B, 7tdv:H, 7tf6:C, 7tf6:O, 7tf6:R, 7tf6:F, 7tf6:N, 7tf6:H, 7tf6:L, 7tf6:T, 7tf6:A, 7tf6:S, 7tf6:G, 7tf6:B
7 7tf9:S 443 446 0.5280 0.5327 0.5291 4.40e-173 7ten:A, 7ten:E, 7ten:B, 7ten:D, 7ten:H, 7ten:J, 7ten:M, 7ten:O, 7ten:Q, 7ten:S, 7ten:U, 7ten:W, 7tf9:H, 7tf9:A, 7tf9:Q, 7tf9:C, 7tf9:O, 7tf9:B, 7tf9:P, 7tf9:R, 7tf9:I, 7tf9:T, 7tf9:F, 7tf9:G, 7tf9:N, 7tfe:A, 7tfe:G, 7tfe:H, 7tfe:I, 7tfe:B, 7tfe:C, 7tfe:J, 7tfe:D, 7tfe:E, 7tfe:F, 7tfe:K, 7tfe:L
8 1f1h:A 468 481 0.4094 0.3910 0.3805 4.52e-96 1f1h:B, 1f1h:C, 1f1h:D, 1f1h:E, 1f1h:F, 1f1h:G, 1f1h:H, 1f1h:I, 1f1h:J, 1f1h:K, 1f1h:L, 1f52:A, 1f52:B, 1f52:C, 1f52:D, 1f52:E, 1f52:F, 1f52:G, 1f52:H, 1f52:I, 1f52:J, 1f52:K, 1f52:L, 1fpy:A, 1fpy:B, 1fpy:C, 1fpy:D, 1fpy:E, 1fpy:F, 1fpy:G, 1fpy:H, 1fpy:I, 1fpy:J, 1fpy:K, 1fpy:L, 2gls:A, 2gls:B, 2gls:C, 2gls:D, 2gls:E, 2gls:F, 2gls:G, 2gls:H, 2gls:I, 2gls:J, 2gls:K, 2gls:L
9 5zlp:J 478 468 0.3960 0.3703 0.3782 1.19e-95 5zlp:A, 5zlp:B, 5zlp:C, 5zlp:D, 5zlp:E, 5zlp:F, 5zlp:H, 5zlp:K, 5zlp:L, 5zlp:G, 5zlp:I
10 1hto:A 477 437 0.3691 0.3459 0.3776 1.06e-94 4acf:A, 4acf:B, 4acf:C, 4acf:D, 4acf:E, 4acf:F, 2bvc:A, 2bvc:B, 2bvc:C, 2bvc:D, 2bvc:E, 2bvc:F, 1hto:B, 1hto:C, 1hto:D, 1hto:E, 1hto:F, 1hto:G, 1hto:H, 1hto:I, 1hto:J, 1hto:K, 1hto:L, 1hto:M, 1hto:N, 1hto:O, 1hto:P, 1hto:Q, 1hto:R, 1hto:S, 1hto:T, 1hto:U, 1hto:V, 1hto:W, 1hto:X, 1htq:A, 1htq:B, 1htq:C, 1htq:D, 1htq:E, 1htq:F, 1htq:G, 1htq:H, 1htq:I, 1htq:J, 1htq:K, 1htq:L, 1htq:M, 1htq:N, 1htq:O, 1htq:P, 1htq:Q, 1htq:R, 1htq:S, 1htq:T, 1htq:U, 1htq:V, 1htq:W, 1htq:X, 2wgs:A, 2wgs:B, 2wgs:C, 2wgs:D, 2wgs:E, 2wgs:F, 2wgs:G, 2wgs:H, 2wgs:I, 2wgs:J, 2wgs:K, 2wgs:L, 2whi:A, 2whi:B, 2whi:C, 2whi:D, 2whi:E, 2whi:F, 4xyc:A, 4xyc:B, 4xyc:C, 4xyc:D, 4xyc:E, 4xyc:F, 4xyc:G, 4xyc:H, 4xyc:I, 4xyc:J, 4xyc:K, 4xyc:L, 4xyc:M, 4xyc:N, 4xyc:O, 4xyc:P, 4xyc:Q, 4xyc:R, 4xyc:S, 4xyc:T, 4xyc:U, 4xyc:V, 4xyc:W, 4xyc:X, 3zxr:A, 3zxr:B, 3zxr:C, 3zxr:D, 3zxr:E, 3zxr:F, 3zxv:A, 3zxv:B, 3zxv:C, 3zxv:D, 3zxv:E, 3zxv:F
11 3ng0:A 465 459 0.3781 0.3634 0.3682 5.02e-93
12 4s17:A 452 474 0.3893 0.3850 0.3671 1.63e-89 4s17:B, 4s17:C, 4s17:D, 4s17:E, 4s17:F
13 1lgr:A 445 481 0.3803 0.3820 0.3534 8.35e-80 1lgr:B, 1lgr:C, 1lgr:D, 1lgr:E, 1lgr:F, 1lgr:G, 1lgr:H, 1lgr:I, 1lgr:J, 1lgr:K, 1lgr:L, 2lgs:A, 2lgs:B, 2lgs:C, 2lgs:D, 2lgs:E, 2lgs:F, 2lgs:G, 2lgs:H, 2lgs:I, 2lgs:J, 2lgs:K, 2lgs:L
14 7cqw:A 430 445 0.3244 0.3372 0.3258 1.65e-64 7cqn:A, 7cqn:B, 7cqn:C, 7cqq:A, 7cqq:B, 7cqq:C, 7cqu:A, 7cqu:B, 7cqu:C, 7cqw:B, 7cqw:C, 7cqx:A, 7cqx:B, 7cqx:C
15 8wwu:B 492 487 0.3087 0.2805 0.2834 3.59e-48 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
16 5dm3:C 396 371 0.2528 0.2854 0.3046 6.29e-46 5dm3:D, 5dm3:B, 5dm3:E, 5dm3:F
17 5dm3:A 374 376 0.2528 0.3021 0.3005 1.23e-44
18 4hpp:A 426 431 0.2550 0.2676 0.2645 4.47e-32
19 8ecy:A 371 334 0.2036 0.2453 0.2725 7.48e-14 8dnu:A, 8ecy:J, 8ecy:L, 8ecy:Q, 8ecy:H, 8ecy:D, 8ecy:B, 8ecy:F, 8ecy:I, 8ecy:M, 2ojw:A, 2ojw:B, 2ojw:C, 2ojw:D, 2ojw:E, 2qc8:A, 2qc8:B, 2qc8:C, 2qc8:D, 2qc8:E, 2qc8:F, 2qc8:G, 2qc8:H, 2qc8:I, 2qc8:J, 2uu7:A, 2uu7:B, 2uu7:C, 2uu7:D, 2uu7:E, 2uu7:F, 2uu7:G, 2uu7:H, 2uu7:I, 2uu7:J, 2uu7:K, 2uu7:L, 2uu7:M, 2uu7:N, 2uu7:O
20 2d3a:A 353 277 0.1767 0.2238 0.2852 3.34e-12 2d3a:B, 2d3a:C, 2d3a:D, 2d3a:E, 2d3a:F, 2d3a:G, 2d3a:H, 2d3a:I, 2d3a:J, 2d3b:A, 2d3b:B, 2d3b:C, 2d3b:D, 2d3b:E, 2d3b:G, 2d3b:F, 2d3b:I, 2d3b:J, 2d3b:H, 2d3c:A, 2d3c:B, 2d3c:C, 2d3c:D, 2d3c:E, 2d3c:F, 2d3c:G, 2d3c:H, 2d3c:I, 2d3c:J
21 7u5n:A 343 217 0.1499 0.1953 0.3088 2.00e-10 7u5n:B, 7u5n:C, 7u5n:D, 7u5n:E, 7u5n:F, 7u5n:G, 7u5n:H, 7u5n:I, 7u5n:J
22 3o6x:A 638 225 0.1186 0.0831 0.2356 1.01e-05 3o6x:B, 3o6x:C, 3o6x:D, 3o6x:E, 3o6x:F
23 8t2j:A 339 49 0.0380 0.0501 0.3469 0.22
24 5gky:A 3660 79 0.0515 0.0063 0.2911 0.70 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
25 2vs4:A 288 145 0.0872 0.1354 0.2690 0.73 1g8o:A, 1g93:A, 1gwv:A, 1gwv:B, 1gww:A, 1gww:B, 1gx0:A, 1gx0:B, 1gx4:A, 1gx4:B, 2jcj:A, 2jck:A, 1k4v:A, 1k4v:B, 5nrb:A, 5nrb:B, 5nrd:A, 5nrd:B, 5nre:A, 1o7o:A, 1o7o:B, 1o7q:A, 1o7q:B, 2vfz:A, 2vfz:B, 2vs3:A, 2vs3:B, 2vs4:B, 2vs5:A, 2vs5:B, 2vxl:A, 1vzt:A, 1vzt:B, 1vzu:A, 1vzu:B, 1vzx:A, 1vzx:B, 2wgz:A, 2wgz:B
26 3j8h:A 3660 79 0.0515 0.0063 0.2911 0.74 3j8h:C, 3j8h:E, 3j8h:G
27 5o3w:B 717 97 0.0671 0.0418 0.3093 1.1 5o3u:A, 5o3u:B, 5o3u:C, 5o3u:D, 5o3v:B, 5o3v:A, 5o3w:A, 5o3w:C, 5o3w:D, 5uw3:A, 5uw3:B, 5uw3:C, 5uw5:A, 5uw5:B, 5uw5:C, 5uw6:A, 5uw6:B, 5uw6:C, 5uzw:A, 5uzw:B, 5uzw:C
28 3ppo:A 272 35 0.0313 0.0515 0.4000 2.1 3ppo:B, 3ppq:A, 3ppq:B, 3ppr:A, 3ppr:B
29 1xv2:C 233 64 0.0425 0.0815 0.2969 4.8 1xv2:A, 1xv2:B, 1xv2:D
30 7bwn:J 280 64 0.0492 0.0786 0.3438 6.5 7bwn:O, 7bwn:C, 7bwn:M, 4gf6:B, 4w74:A, 4w74:B, 4w74:H, 4w74:C, 4w74:D, 4w74:E, 4w76:A, 4w76:B, 4w77:A, 4w77:B, 4w7a:A, 4w7a:B, 4w7c:B, 4w7d:A, 4w7f:A, 4w7r:A, 4w7r:B, 4w7r:C, 4w7r:D
31 7yeh:A 1020 149 0.0828 0.0363 0.2483 7.0 4ay5:A, 4ay5:B, 4ay5:C, 4ay5:D, 4ay6:A, 4ay6:B, 4ay6:C, 4ay6:D, 5c1d:A, 4cdr:A, 4cdr:B, 4cdr:C, 4cdr:D, 8cm9:A, 8cm9:B, 8cm9:D, 8cm9:C, 8fe7:A, 8fe7:C, 8fe7:E, 8fe7:G, 8fuf:A, 8fuf:C, 8fuf:E, 8fuf:G, 4gyw:C, 4gz3:C, 4gz5:A, 4gz5:B, 4gz5:C, 4gz5:D, 4gz6:A, 4gz6:B, 4gz6:C, 4gz6:D, 5hgv:C, 6ibo:A, 5lvv:A, 6ma1:A, 6ma2:A, 6ma3:A, 6ma4:A, 6ma5:A, 4n39:A, 4n3a:A, 4n3b:A, 4n3c:A, 5npr:A, 3pe3:A, 3pe3:B, 3pe3:C, 3pe3:D, 3pe4:A, 3pe4:C, 6q4m:A, 3tax:A, 3tax:C, 1w3b:A, 4xi9:A, 4xi9:B, 4xi9:C, 4xi9:D, 4xif:A, 4xif:B, 4xif:C, 4xif:D
32 1ne7:A 281 74 0.0447 0.0712 0.2703 8.1 1ne7:B, 1ne7:C, 1ne7:E, 1ne7:F, 1ne7:D
33 5lwv:A 711 149 0.0828 0.0520 0.2483 8.1 5bnw:A, 6e37:A, 8fe6:A, 8fe6:C, 8fe6:E, 8fe6:G, 4gyw:A, 4gyy:A, 4gyy:C, 4gz3:A, 5hgv:A, 5nps:A, 6tka:AAA, 5vie:A, 5vie:C, 5vif:A
34 7s7t:A 509 98 0.0671 0.0589 0.3061 8.4 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218