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BioLiP
>protein
STVAISVQGLHYVGTGLAAIALAGVGLGIGTIFGNLLVACARQPNLTKMLFNYAILGFALTEAIGLFALMLAFLMLFS

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8aph:P1 78 78 1.0000 1.0000 1.0000 7.48e-49 8apj:P1
2 8khf:4 75 68 0.5000 0.5200 0.5735 9.10e-23 8ki3:4, 8ki3:5, 6tt7:3, 6tt7:4
3 5bps:B 75 67 0.4103 0.4267 0.4776 3.04e-16 5bps:C, 5bps:A, 5bps:D, 5bps:E, 5bps:K, 5bps:L, 5bps:M, 5bps:N, 5bps:O, 5bq6:A, 5bq6:B, 5bq6:C, 5bq6:E, 5bq6:K, 5bq6:L, 5bq6:M, 5bq6:O, 5bqa:A, 5bqa:B, 5bqa:D, 5bqa:E, 5bqa:K, 5bqa:L, 5bqa:M, 5bqa:N, 5bqa:O, 5bqj:B, 5bqj:C, 5bqj:A, 5bqj:D, 5bqj:E, 5bqj:K, 5bqj:L, 5bqj:M, 5bqj:O, 6cp5:O, 6cp5:P, 4f4s:B, 4f4s:C, 4f4s:A, 4f4s:D, 4f4s:E, 4f4s:K, 4f4s:L, 4f4s:M, 4f4s:N, 4f4s:O, 3u32:L, 3u32:M, 3u32:O
4 3zk1:A 89 72 0.3462 0.3034 0.3750 1.63e-08 3zk1:B, 3zk1:D, 3zk1:G, 3zk1:H, 3zk1:J, 3zk1:N, 3zk1:O, 3zk1:P, 3zk1:R, 3zk1:S, 3zk1:U, 3zk2:A, 3zk2:C, 3zk2:E, 3zk2:H, 3zk2:I, 3zk2:K, 3zk2:M, 3zk2:N, 3zk2:O, 3zk2:P, 3zk2:L
5 2wie:A 82 55 0.2308 0.2195 0.3273 0.004 2wie:B, 2wie:C, 2wie:D, 2wie:E, 2xqs:D, 2xqt:A, 2xqt:B, 2xqt:C, 2xqt:D, 2xqt:E, 2xqu:A, 2xqu:B, 2xqu:C, 2xqu:D, 2xqu:E
6 4cbj:B 69 36 0.1795 0.2029 0.3889 0.068 4cbj:C, 4cbj:F, 4cbj:J, 4cbj:L, 4cbj:M, 4cbk:F, 4cbk:G, 4cbk:J, 4cbk:L, 2x2v:D, 2x2v:F, 2x2v:G, 2x2v:H, 2x2v:J, 2x2v:M
7 6o7c:A 506 27 0.1538 0.0237 0.4444 0.57 6o6j:A
8 8qca:B 756 41 0.2051 0.0212 0.3902 2.4
9 7bj3:A 936 51 0.2436 0.0203 0.3725 3.2 8bty:A, 3eif:A, 1xf1:A, 1xf1:B, 7yzx:A
10 7szv:A 372 62 0.2949 0.0618 0.3710 4.0 7szv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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