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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
STTTYSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKRPFDFDF
FAHLLQKVLAEEEKRKQK

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ity:W 111 98 1.0000 0.8829 1.0000 9.90e-70 8iue:W, 8iuh:W, 5n9g:C, 5n9g:H
2 6f44:W 172 87 0.3367 0.1919 0.3793 2.18e-16 6f42:W
3 6cnb:S 217 87 0.3367 0.1521 0.3793 4.11e-16 6cnc:S, 6cnd:S, 6cnf:S
4 6f40:W 218 87 0.3367 0.1514 0.3793 4.35e-16 6f41:W
5 6eu0:V 273 87 0.3367 0.1209 0.3793 1.05e-15 7q5b:X
6 3osg:A 110 51 0.1633 0.1455 0.3137 0.006 3osf:A, 3osf:D, 3osg:D
7 3osg:A 110 37 0.1122 0.1000 0.2973 0.33 3osf:A, 3osf:D, 3osg:D
8 3zqc:J 119 39 0.1224 0.1008 0.3077 0.51 3zqc:A, 3zqc:D, 3zqc:G
9 4d26:A 430 57 0.1735 0.0395 0.2982 1.2 4d25:A
10 3wx7:A 402 44 0.1429 0.0348 0.3182 1.4 3wx7:B
11 1h88:C 152 39 0.1122 0.0724 0.2821 2.0 1h89:C, 1h8a:C, 1mse:C, 1msf:C
12 7mq8:LP 567 19 0.1020 0.0176 0.5263 2.4 7mq9:LP, 7mqa:LP
13 5h06:B 499 22 0.0918 0.0180 0.4091 5.1 5h05:A, 5h05:B, 5h05:C, 5h05:D, 5h06:A, 5h06:C, 5h06:D
14 5eyb:A 340 63 0.1224 0.0353 0.1905 6.9 5eyb:B
15 2x7v:A 286 38 0.1633 0.0559 0.4211 7.5 4hno:A, 2x7w:A
16 6ahr:L 362 17 0.0918 0.0249 0.5294 7.6 6ahu:L
17 1jhd:A 396 43 0.1633 0.0404 0.3721 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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