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BioLiP
>protein
STMALLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLMVAK

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6akl:A 52 52 1.0000 1.0000 1.0000 1.49e-31 6akl:B
2 8wwu:B 492 24 0.2308 0.0244 0.5000 0.63 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
3 6pw4:B 675 31 0.2115 0.0163 0.3548 3.7 6pw4:D
4 5bxa:A 414 41 0.2885 0.0362 0.3659 6.6
5 6pw5:A 734 31 0.2115 0.0150 0.3548 7.0 6pw5:C
6 6pw5:B 782 31 0.2115 0.0141 0.3548 7.2 6pw5:D
7 6pw4:A 696 31 0.2115 0.0158 0.3548 8.5 6pw4:C
8 8d32:A 186 46 0.2115 0.0591 0.2391 8.8 6wgs:A, 6wgv:A, 6wh5:A, 6wh5:B, 6wh5:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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