Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
STIIKGYDFNEGINYDALLDQYMSTGFQASHFAQAVQQINTMLTIREEQFEGDHTLPYPEGKQKRACTIFLGYTSNLVTS
GVRENIRYLVEHDLVDCIVTSAGGVEEDLIKCLAPSYLGAFDLDGKTLRHNGLNRAGNIIIPNNNYCQFEDWLMPILDSC
ELEQKNNDFSWTPSKLIDRLGAEINDKRSICYWAHRNRIPVFSPALTDGSIGDMLYFHSFRNGGIKLDIVEDLRHINTMA
VRSNRTGVILLGGGVMKHHINNANLMRNGSDYAVYVNTGQEFDGSDSGARPDEAVSWGKVRSDCRPVKIYADATLVFPLL
VAKTFARHVQQKH

The query sequence (length=333) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6w3z:C 352 333 1.0000 0.9460 1.0000 0.0 6w3z:A, 6w3z:D, 6w3z:B
2 8a0e:A 356 332 0.6426 0.6011 0.6446 2.98e-167 8a0e:B, 8a0e:C, 8a0e:D, 8a0f:A, 8a0f:B, 8a0g:A, 8a0g:B, 7a6t:A, 7a6t:B, 1dhs:A, 6p4v:A, 6p4v:B, 6pgr:A, 6pgr:B, 1rlz:A, 1roz:A, 1roz:B, 1rqd:A, 1rqd:B, 6xxi:A, 6xxi:B, 6xxj:A, 6xxj:B, 6xxk:A, 6xxk:B, 6xxl:A, 6xxl:B, 6xxm:A, 6xxm:B
3 8qzw:A 359 340 0.5706 0.5292 0.5588 1.07e-138 8qzx:A, 8qzx:B, 8qzx:C, 8qzx:D
4 6wkz:B 296 332 0.5706 0.6419 0.5723 5.68e-138 6wkz:A, 6wl6:A, 6wl6:B
5 7cmc:A 312 326 0.3934 0.4199 0.4018 2.28e-79 7cmc:D
6 6dft:F 321 320 0.3483 0.3614 0.3625 3.99e-65 6dft:B, 6dft:D, 6dft:H, 6dft:J, 6dft:L
7 6dft:A 384 378 0.3934 0.3411 0.3466 3.94e-61 6dft:C, 6dft:E, 6dft:G, 6dft:I, 6dft:K
8 8put:A 312 267 0.2853 0.3045 0.3558 4.78e-51 8put:B, 8put:C, 8put:D
9 3ahm:A 564 110 0.0841 0.0496 0.2545 1.2 3ahm:B, 3ahn:A, 3ahn:B, 3aho:A, 3aho:B
10 7ooc:R 84 24 0.0300 0.1190 0.4167 2.5 7p6z:R, 7pah:R, 7pai:R, 7paj:R, 7pak:R, 7pal:R, 7pam:R, 7pan:R, 7pao:R, 7paq:R, 7par:R, 7pas:R, 7ph9:R, 7pha:R, 7phb:R, 7phc:R, 7pi8:R, 7pi9:R, 7pia:R, 7pib:R, 7pic:R, 7pio:R, 7pip:R, 7piq:R, 7pir:R, 7pis:R, 7pit:R
11 1zde:A 160 72 0.0541 0.1125 0.2500 4.2
12 6bul:B 327 48 0.0420 0.0428 0.2917 8.3 6aqj:A, 6aqj:B, 6bul:A, 6c55:A, 6c55:B, 6c5n:A, 6c5n:B, 7ke2:B, 7ke2:A, 7kh7:A, 7kh7:B, 6vo2:A, 6vo2:B, 5w3k:A, 5w3k:B
13 8q1b:A 443 72 0.0541 0.0406 0.2500 8.5 8q1b:L
14 3o14:A 222 54 0.0450 0.0676 0.2778 8.8 3o14:B
15 6g9w:B 468 176 0.1291 0.0919 0.2443 9.6 6g9v:B, 6g9w:A, 6tn3:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218