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BioLiP
>protein
SSNAKIDQLSSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRLDNMAT

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jcc:C 53 53 1.0000 1.0000 1.0000 1.15e-27 1jcc:A, 1jcc:B
2 3q6y:A 305 46 0.2642 0.0459 0.3043 1.2
3 8sok:D 630 23 0.2075 0.0175 0.4783 5.1 5h65:A, 3kjo:A, 3kjp:A, 7s1o:A, 7s1o:B, 7s1t:A, 7s1t:D, 7s1t:G, 7s1t:J, 7s1u:A, 7s1u:B, 8sh0:A, 8sh1:A, 8soj:D, 5un7:A, 1xjv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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