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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSFGTPFERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVEN
NTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGF
KPAGVLCELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQA

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3lqu:A 205 204 0.9951 0.9951 1.0000 1.94e-150 1g58:A, 3lrj:A, 3lrj:B, 3lrj:C, 3lrj:D, 3ls6:A, 3ls6:B
2 4p6p:B 218 203 0.6585 0.6193 0.6650 1.63e-95 4p6c:A, 4p6c:B, 4p6d:A, 4p6d:B, 4p6p:A, 4p77:A, 4p77:B, 4p8e:A, 4p8e:B, 7uf0:A, 7uf1:A, 7uf2:A, 7uf3:A, 7uf4:A, 7uf5:A
3 1tku:A 196 197 0.4585 0.4796 0.4772 2.55e-62 2riu:A, 1tku:B
4 1k4i:A 216 209 0.4585 0.4352 0.4498 5.16e-56 1k49:A, 1k4l:A, 1k4o:A, 1k4p:A
5 4i14:A 325 203 0.4341 0.2738 0.4384 7.08e-50 4i14:B, 3mio:A, 3mio:B
6 1pvw:A 219 218 0.3171 0.2968 0.2982 2.60e-26 1pvw:B, 1pvy:A, 1pvy:B, 1snn:A, 1snn:B
7 6ajc:A 413 172 0.2244 0.1114 0.2674 1.8 6ajc:B, 6ajc:C, 6ajc:D, 6ajc:E, 6ajc:F, 6ajc:G, 6ajc:H
8 7wrr:A 650 197 0.2341 0.0738 0.2437 3.6 7wrr:B, 7wrr:C, 7wrr:D, 7wrt:A, 7wrt:B, 7wrt:C, 7wrt:D
9 8q4h:A 503 72 0.1073 0.0437 0.3056 4.1 8q4h:B
10 8iqi:C 916 30 0.0488 0.0109 0.3333 5.7 8iqc:A, 8iqc:B, 8iqd:A, 8iqd:B, 8iqd:C, 8iqd:D, 8iqi:A, 8iqi:B, 8iqi:D, 8iqi:E, 8iqi:F
11 6aj6:A 413 153 0.1951 0.0969 0.2614 6.1 6aj6:C, 6aj8:A, 6aj8:B, 6aja:A, 6aja:B, 6aja:C, 6aja:D, 6ajb:A, 6ajb:B, 6ajb:C, 6ajb:D, 7e3n:A
12 8blw:B 626 56 0.0976 0.0319 0.3571 9.8 8ptd:A, 8ptf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218