Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6fgp:B 68 65 0.9692 0.9265 0.9692 4.15e-43 1b3a:B, 1b3a:A, 5coy:A, 5dnf:C, 5dnf:D, 5dnf:I, 5dnf:A, 5dnf:F, 5dnf:G, 5dnf:H, 1u4l:A, 1u4m:A
2 7f1t:A 423 66 0.4923 0.0757 0.4848 4.74e-20 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
3 2ra4:B 65 58 0.2923 0.2923 0.3276 1.24e-11
4 2mpm:A 74 61 0.3692 0.3243 0.3934 6.84e-11
5 4r8i:A 68 58 0.2923 0.2794 0.3276 1.02e-07
6 2hci:A 68 58 0.2923 0.2794 0.3276 9.11e-05
7 2nwg:A 68 45 0.2308 0.2206 0.3333 7.23e-04 2nwg:B, 4uai:A
8 6gwi:B 450 41 0.2154 0.0311 0.3415 0.13 6gwi:A
9 1ilp:A 71 57 0.1846 0.1690 0.2105 0.16 1ilq:A, 6xmn:A
10 4v6w:Ac 62 44 0.1846 0.1935 0.2727 0.79 6xu6:Ac, 6xu7:Ac, 6xu8:Ac
11 6edk:A 193 18 0.1077 0.0363 0.3889 2.2 6ci4:A, 6ci5:A
12 6q2m:A 544 22 0.1692 0.0202 0.5000 4.0 1ba3:A, 5dwv:A, 4e5d:A, 4g36:A, 4g36:B, 4g37:A, 4g37:B, 5gyz:A, 5gz2:A, 6hps:A, 6hps:B, 3ies:A, 5kyt:A, 5kyt:B, 5kyv:A, 5kyv:B, 6q2m:B, 6q2m:C, 3rix:A, 5wys:A
13 3e78:A 365 36 0.1692 0.0301 0.3056 7.1 3e79:A, 3eki:A
14 7t80:A 216 32 0.1846 0.0556 0.3750 8.4 7t80:B
15 8e0p:B 789 19 0.0923 0.0076 0.3158 8.7 8e0p:A, 8e0p:C, 8e0p:D
16 5mr0:D 290 32 0.1692 0.0379 0.3438 8.7 5mr0:A, 5mr0:B, 5mr0:C, 5mr0:E, 5mr0:F
17 2d74:B 137 33 0.1692 0.0803 0.3333 9.8 2dcu:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417