Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTK

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hym:A 44 44 1.0000 1.0000 1.0000 2.62e-26
2 1cir:A 39 38 0.3409 0.3846 0.3947 0.004 1ciq:A, 1cq4:A
3 1egp:A 39 36 0.2727 0.3077 0.3333 0.32
4 7lhv:A 575 33 0.3182 0.0243 0.4242 2.5 7lhv:B
5 1fgx:B 273 35 0.2955 0.0476 0.3714 3.1 1fr8:A, 1fr8:B, 2fyd:B, 2fyd:D, 1nf5:B, 1nf5:D, 1nhe:B, 1nhe:D, 1nkh:B, 1nkh:D, 1nwg:B, 1nwg:D, 1o23:B, 1o23:D, 1oqm:B, 1oqm:D, 1pzy:B, 1pzy:D, 1yro:B, 1yro:D
6 2agd:A 273 34 0.2727 0.0440 0.3529 4.0 2ae7:A, 2ae7:B, 2ae7:C, 2aec:A, 2aec:B, 2aec:C, 2aes:A, 2aes:B, 2aes:C, 2agd:B, 2agd:C, 2ah9:A, 2ah9:B, 2ah9:C, 3ee5:A, 3ee5:B, 3ee5:C, 4ee3:A, 4ee3:B, 4ee3:C, 4ee4:A, 4ee4:B, 4ee4:C, 4ee5:A, 4ee5:B, 4ee5:C, 4eea:A, 4eea:B, 4eea:C, 4eeg:A, 4eeg:B, 4eeg:C, 4eem:A, 4eem:B, 4eem:C, 4eeo:A, 4eeo:B, 4eeo:C, 2fya:A, 2fyb:A, 2fyc:B, 2fyc:D, 4krv:A, 4krv:B, 1o0r:A, 1o0r:B, 1tvy:A, 1tvy:B, 1tw1:A, 1tw1:B, 1tw5:A, 1tw5:B
7 1hdg:O 332 26 0.2045 0.0271 0.3462 5.2 1hdg:Q
8 2zb3:A 345 34 0.2273 0.0290 0.2941 6.3
9 5l8e:A 517 18 0.1818 0.0155 0.4444 6.4
10 3tqc:B 305 37 0.2727 0.0393 0.3243 7.0 3tqc:A
11 6yxy:EB 663 31 0.2273 0.0151 0.3226 7.9 7aoi:XB, 6yxx:EB
12 8pu0:A 1157 28 0.2273 0.0086 0.3571 8.8
13 8ptx:A 1215 28 0.2273 0.0082 0.3571 9.6

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417