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BioLiP
>protein
SRWSSVWPNMHYGAMYLSYSIGRKLPMKGVNWVTRESNRLTNFSNRYQAVINDIDVKKTEEELGITLQDIRWNDHRRIYW
KCSFCGSSYRKSVSVRTKFHAGCNFCKGRYPSEVLREQHQSLSLAASAPELIKQLKETDKKDNLGSLALTSKFRAEWKCQ
SCGGSYRASVRSRTGMVENGQCPLHPNIVDWSAYCPSCSWRPNMEAIAEEVQRTGQFLGLEAESRKIASAPPARIPRRKK
LV

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aor:at 242 242 1.0000 1.0000 1.0000 0.0
2 7pub:DS 243 242 0.7231 0.7202 0.7231 2.63e-133 6hiv:DS, 6hiw:DS, 6hiy:DS
3 7ane:at 204 204 0.5537 0.6569 0.6569 1.36e-101
4 6yxx:E2 369 145 0.1240 0.0813 0.2069 0.010
5 6yxx:E2 369 115 0.1322 0.0867 0.2783 0.21
6 6sga:Fd 96 29 0.0496 0.1250 0.4138 0.27 7pua:Fd, 6sgb:Fd
7 6sga:Fd 96 72 0.0785 0.1979 0.2639 0.75 7pua:Fd, 6sgb:Fd
8 7dco:M 176 71 0.0826 0.1136 0.2817 1.9 5gm6:a
9 6f0y:A 172 96 0.0909 0.1279 0.2292 2.1 2ygv:A, 2ygv:D, 2ygv:B, 2ygv:C
10 8qxc:H 221 60 0.0579 0.0633 0.2333 2.3 8qxc:A
11 2i13:A 151 118 0.1116 0.1788 0.2288 3.0
12 6l3a:B 393 71 0.0950 0.0585 0.3239 3.2 6l39:A, 6l39:B, 6l3a:A
13 4odt:H 226 60 0.0579 0.0619 0.2333 3.3 1cbv:H, 2hkf:H, 4z8f:H
14 2eml:A 46 25 0.0455 0.2391 0.4400 4.6
15 5vh4:A 220 70 0.0744 0.0818 0.2571 4.7
16 8gym:m2 318 90 0.1074 0.0818 0.2889 5.5 8gym:M2
17 7z6h:K 439 77 0.0744 0.0410 0.2338 6.2
18 7odf:A 703 73 0.0992 0.0341 0.3288 7.2
19 3cxd:H 216 60 0.0579 0.0648 0.2333 7.4 3dsf:H
20 6y6n:A 116 95 0.0868 0.1810 0.2211 7.4 6y6o:A
21 8fve:B 538 46 0.0661 0.0297 0.3478 7.5 2ad5:A, 2ad5:B, 8fv6:AAA, 8fv6:BBB, 8fv7:AAA, 8fv7:BBB, 8fv8:AAA, 8fv8:BBB, 8fv9:AAA, 8fv9:BBB, 8fva:AAA, 8fva:BBB, 8fvb:AAA, 8fvb:BBB, 8fvc:AAA, 8fvc:BBB, 8fvd:A, 8fvd:B, 8fve:A, 8i9o:A, 8i9o:B, 8i9o:D, 8i9o:C, 1s1m:A, 1s1m:B, 8sbr:A, 8sbr:B, 5tkv:A, 5tkv:B, 5u3c:A, 5u3c:B, 5u3c:C, 5u3c:D, 5u6r:A, 5u6r:B, 5u6r:C, 5u6r:D
22 6g9w:B 468 84 0.1033 0.0534 0.2976 8.2 6g9v:B, 6g9w:A, 6tn3:B
23 4fab:H 216 70 0.0744 0.0833 0.2571 9.1 1flr:H
24 4qww:D 225 73 0.0744 0.0800 0.2466 9.2 4qww:F, 3sge:H, 3sge:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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