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BioLiP
>protein
SRNVDKANSVLVRFQEQQAESAGGYKDYSRYQRPRNVSKVKSIKEANEWKRQVSKEIKQKSTRIYDPSLNEMQIAELNDE
LNNLFKEWKRWQWHI

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b9v:G 138 95 0.9368 0.6449 0.9368 8.43e-59 5gmk:H, 6j6n:H, 6j6q:H, 5lj3:G, 5lj5:G
2 5yzg:y 112 92 0.3158 0.2679 0.3261 1.78e-11 8i0w:z
3 4x8c:A 554 69 0.2105 0.0361 0.2899 0.14
4 2vq5:A 173 67 0.1579 0.0867 0.2239 0.55 5non:A, 5non:B, 5non:C, 6rp3:A, 2vq5:B, 6z82:A
5 7yh2:A 156 33 0.1579 0.0962 0.4545 1.2 7yh2:B
6 5j7w:C 315 40 0.1158 0.0349 0.2750 1.2 5j7w:D, 4o7u:B, 4o7u:D, 6qxs:B, 6qxs:D, 6qya:B, 6qya:D, 3uwl:B, 3uwl:D
7 4c4o:B 335 18 0.0947 0.0269 0.5000 2.8 4c4o:A, 4c4o:C, 4c4o:D, 3wle:A, 3wle:B, 3wle:C, 3wle:D, 3wlf:A, 3wlf:B, 3wlf:C, 3wlf:D, 3wnq:A, 3wnq:B, 3wnq:C, 3wnq:D
8 8pmq:2 355 66 0.1895 0.0507 0.2727 4.8 7ns4:b
9 8btd:SG 238 28 0.1158 0.0462 0.3929 6.9 8brm:SG, 8bsi:SG, 8bsj:SG, 8btr:SG

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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