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BioLiP
>protein
SRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAAL

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2m0o:A 79 79 1.0000 1.0000 1.0000 1.74e-52
2 5xfo:A 315 58 0.7342 0.1841 1.0000 1.49e-35 8h43:A, 8h43:B, 8h43:C, 4hcz:A, 4hcz:B, 7lky:B, 7lky:H, 7lky:A, 7lky:C, 7lky:D, 7lky:E, 7lky:F, 7lky:G, 6wat:AA, 6wat:AC, 6wat:BA, 6wat:BC, 6wat:CA, 6wat:CC, 6wat:DA, 6wat:DC, 6wat:EC, 6wat:EA, 6wat:FA, 6wat:FC, 6wat:GA, 6wat:GC, 6wat:HA, 6wat:HC, 6wat:IA, 6wat:IC, 6wat:JA, 6wat:JC, 6wat:KA, 6wat:KC, 6wat:OC, 6wat:LA, 6wat:LC, 6wat:MA, 6wat:MC, 6wat:NA, 6wat:NC, 6wat:OA, 6wav:A, 6wav:C, 6wav:B, 6wav:D, 5xfn:A, 5xfp:B, 5xfp:A, 5xfp:E, 5xfq:A, 5xfq:B
3 4bd3:A 58 54 0.4177 0.5690 0.6111 2.23e-19 6wau:A, 6wau:F, 6wau:B, 6wau:D, 6wau:C, 6wau:E
4 5xfr:A 309 51 0.3924 0.1003 0.6078 5.85e-17 5xfr:B
5 7nvw:2 390 70 0.2911 0.0590 0.3286 0.010 7nvv:2
6 2gfa:B 110 46 0.2278 0.1636 0.3913 0.040 5d6y:A, 5d6y:D, 5d6y:B, 5d6y:C, 2gfa:A, 2qqs:A, 2qqs:B, 5var:A
7 4a4e:A 64 33 0.1646 0.2031 0.3939 0.30 4a4g:A, 4qq6:A, 7w2p:A, 7w30:A, 7w30:B, 7w30:C, 7w30:D
8 6zj3:LV 238 39 0.1772 0.0588 0.3590 0.87
9 4ix3:B 350 45 0.1772 0.0400 0.3111 1.7 4ix3:A, 4ix4:A, 4ix4:B, 4ix5:A, 4ix5:B, 4ix6:A, 4ix6:B
10 8hku:L13P 140 34 0.1646 0.0929 0.3824 1.8 8hkv:L13P, 8hky:L13P, 8hkz:L13P, 8hl1:L13P, 8hl2:L13P, 8hl3:L13P, 8hl4:L13P, 8hl5:L13P
11 4y3o:B 461 49 0.2152 0.0369 0.3469 2.3 4cck:A, 4cck:B, 4cck:C, 4cck:D, 4ccm:A, 4ccm:B, 4ccn:A, 4ccn:B, 4cco:A, 4cco:B, 4diq:A, 4diq:B, 4e4h:A, 4e4h:B, 4e4h:C, 4e4h:D, 4y3o:A
12 7yfx:A 746 35 0.1519 0.0161 0.3429 4.8 7yfy:A, 7ygn:A
13 7de9:A 58 60 0.2025 0.2759 0.2667 6.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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