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BioLiP
>protein
SRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYIMTLGCLAPY
RRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLKVPSGQNAD
VQKTDN

The query sequence (length=166) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ob0:C 166 166 1.0000 1.0000 1.0000 1.14e-123 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
2 6z00:A 156 150 0.4940 0.5256 0.5467 9.36e-55 6yzz:A, 6z00:B
3 7oju:A 214 185 0.2892 0.2243 0.2595 7.70e-15
4 6th0:A 176 152 0.2169 0.2045 0.2368 7.94e-12 6tgx:A, 6tgx:B, 6th0:B
5 5c88:A 158 149 0.2590 0.2722 0.2886 8.11e-12 6ag4:A, 6ag5:A, 5c88:B, 4lx9:A, 4r3k:A, 4r3l:A, 2x7b:A
6 7l1k:A 149 124 0.2349 0.2617 0.3145 4.01e-10
7 4pv6:G 154 143 0.1928 0.2078 0.2238 3.81e-09 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
8 7mx2:A 152 87 0.1807 0.1974 0.3448 5.73e-09 7rb3:A
9 6hd7:v 161 156 0.2530 0.2609 0.2692 1.09e-08 4xnh:C, 4xpd:C, 4y49:C, 4y49:I, 4y49:O
10 4hnx:B 213 110 0.1928 0.1502 0.2909 3.24e-08 4hnw:B, 6o07:B, 4xnh:B, 4xpd:B, 4y49:B, 4y49:H, 4y49:N
11 6o07:C 139 150 0.2349 0.2806 0.2600 9.65e-08
12 5hgz:A 211 147 0.2229 0.1754 0.2517 4.28e-07 5hh0:A, 5hh1:A, 5icv:A, 5icv:B, 5icw:A, 5icw:B, 5icw:C, 5icw:D
13 8g0l:A 158 116 0.2048 0.2152 0.2931 7.61e-07 7stx:A, 6vp9:A
14 2cnm:A 151 57 0.1145 0.1258 0.3333 9.96e-06 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
15 6c95:B 160 153 0.2169 0.2250 0.2353 1.25e-05 6ppl:C, 6pw9:C
16 6ygb:A 159 99 0.1627 0.1698 0.2727 1.63e-05 6ygc:A, 6ygd:A
17 2vi7:C 165 65 0.1145 0.1152 0.2923 3.98e-05
18 5nnp:B 179 122 0.2169 0.2011 0.2951 8.52e-05 5nnp:F
19 1tiq:A 173 84 0.1566 0.1503 0.3095 9.04e-05 1tiq:B
20 3ld2:B 162 61 0.1265 0.1296 0.3443 5.80e-04 3ld2:A, 3ld2:C, 3ld2:D
21 2i79:A 171 102 0.1446 0.1404 0.2353 0.001 2i79:B, 2i79:C, 2i79:D, 2i79:E, 2i79:F
22 5k18:B 179 142 0.2289 0.2123 0.2676 0.001 5k04:B, 5k18:D
23 2ge3:A 164 83 0.1627 0.1646 0.3253 0.004 2ge3:B, 2ge3:C
24 6ao7:A 153 105 0.1566 0.1699 0.2476 0.005
25 6zmp:A 190 88 0.1566 0.1368 0.2955 0.012 6zmp:B
26 6bvc:A 154 86 0.1386 0.1494 0.2674 0.012 1bo4:A, 1bo4:B
27 7ovv:B 196 112 0.1988 0.1684 0.2946 0.037 7ovv:A
28 5f47:B 152 75 0.1205 0.1316 0.2667 0.042 5f47:A, 5f48:A, 5f48:B, 5f49:A, 5f49:B, 5f49:C, 5f49:D, 5u08:A, 5u08:B, 5u08:C, 5u08:D
29 6wqc:A 293 83 0.1325 0.0751 0.2651 0.059 6wqb:A
30 2bsw:A 145 137 0.1928 0.2207 0.2336 0.066 2jdc:A, 2jdd:A
31 3pp9:A 176 59 0.1205 0.1136 0.3390 0.068 3pp9:B, 3pp9:C
32 3ddd:A 281 82 0.1446 0.0854 0.2927 0.090
33 4kvm:E 153 85 0.1446 0.1569 0.2824 0.10 4kvm:F, 4kvm:G, 4kvm:H, 4kvo:E, 4kvo:F, 4kvo:G, 4kvo:H, 4kvx:A, 4kvx:B
34 5hmn:B 159 64 0.1084 0.1132 0.2812 0.26 5hmn:A, 5hmn:C, 5hmn:E, 5hmn:F
35 4qc6:A 179 51 0.1024 0.0950 0.3333 0.38 4qc6:B
36 2b4b:B 170 69 0.0964 0.0941 0.2319 0.39 2b3v:A, 2b4b:A, 2b4d:A, 2b4d:B, 2b58:A, 3bj7:A, 3bj7:B, 3bj7:C, 3bj7:D, 3bj8:A, 3bj8:B, 3bj8:C, 3bj8:D, 2fxf:A, 2fxf:B, 2jev:A, 2jev:B
37 3gy9:A 149 58 0.1084 0.1208 0.3103 0.52 3gya:A
38 3owc:A 172 51 0.1084 0.1047 0.3529 0.60 3owc:B
39 3d8p:A 158 51 0.1265 0.1329 0.4118 0.64
40 5wph:A 179 51 0.0783 0.0726 0.2549 0.80 6m7g:A, 6m7g:C, 6m7g:B, 6m7g:D, 6m7g:E, 6m7g:F, 6m7g:L, 5wph:B
41 3nio:A 316 60 0.0964 0.0506 0.2667 0.89 3nio:B, 3nio:C, 3nio:D, 3nio:E, 3nio:F
42 2bei:A 156 74 0.0964 0.1026 0.2162 1.2 2q4v:A
43 3f5b:A 172 19 0.0723 0.0698 0.6316 1.9
44 1glc:F 161 57 0.1024 0.1056 0.2982 1.9 1f3z:A, 1gle:F, 2mp0:B, 1o2f:A
45 2xoy:B 214 21 0.0723 0.0561 0.5714 2.0 2xoc:A, 2xoc:B, 2xoy:A, 2xoz:A, 2xoz:B, 2xp0:A, 2xp0:B
46 1wwz:A 157 86 0.1627 0.1720 0.3140 2.3 1wwz:B
47 3f8k:A 131 49 0.0904 0.1145 0.3061 2.9
48 2bue:A 179 44 0.0904 0.0838 0.3409 2.9 2prb:A, 2qir:A, 1v0c:A, 2vqy:A
49 6bff:A 178 77 0.1145 0.1067 0.2468 3.0 6bff:B, 6bfh:A
50 6e1x:C 176 43 0.0783 0.0739 0.3023 3.1 5cnp:B, 5cnp:D, 5cnp:F, 6cx8:A, 6cx8:B, 6cx8:C, 6cx8:D, 6cx8:E, 6cx8:F, 6e1x:A, 6e1x:B, 6e1x:D, 4mhd:A, 4mhd:B, 4mhd:C, 4mi4:A, 4mi4:B, 4mi4:C, 4ncz:A, 4ncz:C, 4ncz:B, 4r57:A, 4r57:B, 4r57:C, 4r57:D, 4r57:E, 4r57:F, 4r57:G, 4r57:H, 4r57:I, 4r57:J, 4r57:K, 4r57:L, 4r87:A, 4r87:B, 4r87:C, 4r87:D, 4r87:E, 4r87:F, 4r87:G, 4r87:H, 4r87:I, 4r87:J, 4r87:K, 4r87:L, 5ug4:A, 5ug4:B, 5ug4:C, 4ygo:A, 4ygo:C, 4ygo:D, 4ygo:E
51 5t7e:D 175 47 0.0602 0.0571 0.2128 3.2 5t7d:A, 5t7d:B, 5t7d:C, 5t7d:D, 5t7e:A, 5t7e:B, 5t7e:C
52 5e62:A 424 50 0.1024 0.0401 0.3400 4.1 5e62:C, 5e65:A, 5e65:C, 5e66:A
53 6d72:B 176 23 0.0783 0.0739 0.5652 6.7 6d72:A
54 1b87:A 181 53 0.0964 0.0884 0.3019 6.9 2a4n:A, 2a4n:B, 1n71:A, 1n71:B, 1n71:C, 1n71:D
55 3wr7:A 170 23 0.0723 0.0706 0.5217 7.5 4r9m:A, 3wr7:C, 3wr7:B, 3wr7:D
56 8iyo:D 163 49 0.0964 0.0982 0.3265 9.2 8iyo:A, 8iyo:B, 8iyo:C
57 7dde:A 525 30 0.0482 0.0152 0.2667 9.4 7dde:C, 7dde:E, 7dde:G, 7dde:I, 7dde:K, 7dde:M, 7dde:O, 7dde:Q, 7dde:S, 7dde:V, 7dde:X
58 7zkt:B 202 60 0.1145 0.0941 0.3167 9.8 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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