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BioLiP
>protein
SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWK

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1cf7:A 67 67 1.0000 1.0000 1.0000 5.72e-43
2 4yo2:A 186 69 0.3881 0.1398 0.3768 9.12e-10
3 4yo2:A 186 71 0.3582 0.1290 0.3380 5.20e-04
4 1cf7:B 82 40 0.2836 0.2317 0.4750 0.089
5 2rcc:C 311 28 0.1791 0.0386 0.4286 0.12 2rcc:B
6 7p69:B 169 46 0.1940 0.0769 0.2826 0.95 7nz1:B, 7p7e:B, 7zc5:B, 7zci:B
7 7awt:B 141 46 0.1940 0.0922 0.2826 1.3
8 8act:A 873 32 0.2090 0.0160 0.4375 4.5 8act:B, 9f6c:B, 8qyp:A, 8qyq:A, 8qyq:B, 8qyr:B
9 7d8o:A 163 41 0.2239 0.0920 0.3659 4.6 7d8o:C, 7d8o:E, 7d8o:G, 7d8o:I, 7d8o:K
10 3r7d:A 291 44 0.2090 0.0481 0.3182 6.0 3r7d:C, 3r7d:B, 3r7f:A, 3r7f:B, 3r7f:C, 3r7l:A, 3r7l:B, 3r7l:C, 3r7l:D, 3r7l:E, 3r7l:F
11 7tjj:I 380 24 0.1493 0.0263 0.4167 6.0 7mca:I, 7tjh:I, 7tji:I, 7tjk:I, 5v8f:9, 6wgc:9, 6wgg:9, 6wgi:9
12 4n8g:A 325 45 0.1493 0.0308 0.2222 8.5 4n8g:B, 4n8g:C, 4n8g:D
13 2xd0:A 162 41 0.2239 0.0926 0.3659 9.4 2xd0:E, 2xd0:B, 2xd0:X, 2xd0:Z, 2xd0:Y, 2xdb:A, 2xdd:B, 2xdd:E, 2xdd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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