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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLEKQDWEHAANDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQH
NIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQRFNMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDF
KCKTLQNREHDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQ
NWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQ
FTVKLRLLVKLQELNYNLKVKVLFDKDVNERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQGPLIVTEE
LHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAEPRNLSFFLTPPCARWAQLSEVLSWQFSSV
TKRGLNVDQLNMLGEKLLGPNASPDGLIPWTRFCKENINDKNFPFWLWIESILELIKKHLLPLWNDGCIMGFISKERERA
LLKDQQPGTFLLRFSESSREGAITFTWVERSNGGEPDFHAVEPYTKKELSAVTFPDIIRNYKVMAAENIPENPLKYLYPN
IDKDHAFGKYYSR

The query sequence (length=653) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1yvl:B 653 653 1.0000 1.0000 1.0000 0.0 1bf5:A, 7nuf:A, 1yvl:A
2 1bg1:A 559 539 0.4609 0.5385 0.5584 0.0 4e68:A, 6njs:A, 6nuq:A, 6qhd:A
3 6qhd:B 532 527 0.4518 0.5545 0.5598 0.0
4 7tvb:A 558 495 0.2542 0.2975 0.3354 1.71e-66 7tva:A, 7tva:B, 7ubt:A, 7uc6:A, 7uc7:A
5 5d39:A 489 510 0.2328 0.3108 0.2980 2.34e-40 5d39:C, 5d39:B, 5d39:D, 4y5w:B, 4y5w:D, 4y5w:A
6 4y5w:C 465 482 0.2175 0.3054 0.2946 6.48e-38
7 4h7u:A 577 102 0.0413 0.0468 0.2647 0.37
8 3rsr:A 610 68 0.0322 0.0344 0.3088 4.2
9 1fu5:A 111 92 0.0413 0.2432 0.2935 4.4 1oo4:A
10 7rnu:C 110 74 0.0368 0.2182 0.3243 4.5 7rnu:A, 7rnu:E, 7rnu:G
11 1bt4:A 361 102 0.0444 0.0803 0.2843 5.6 2c0r:A, 2c0r:B, 1w3u:A
12 6z2w:E 2325 92 0.0444 0.0125 0.3152 6.5 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218