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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQWGSGKNLYDKVCGHCHKPEVGVGPVLEGRGLPEAYIKDIVRNGFRAMPAFPASYVDDESLTQVAEYLSSLPA

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1wve:C 75 74 1.0000 0.9867 1.0000 9.08e-52 1dii:C, 1dii:D, 1diq:C, 1diq:D, 1wve:D
2 7y5e:GN 84 73 0.2973 0.2619 0.3014 0.036 7y5e:G2, 7y7a:G7, 7y7a:Go
3 3ph2:B 85 74 0.2703 0.2353 0.2703 0.045 2v08:A, 2v08:B
4 8hn3:A 80 79 0.3108 0.2875 0.2911 0.049 8hn3:B
5 1c6o:A 89 77 0.2703 0.2247 0.2597 0.095 1c6o:B, 1c6r:A
6 3dmi:A 87 77 0.3108 0.2644 0.2987 0.12
7 2zbo:A 86 75 0.2838 0.2442 0.2800 0.21 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
8 6f0k:E 182 63 0.2297 0.0934 0.2698 0.45
9 1gdv:A 85 76 0.3108 0.2706 0.3026 0.57
10 7w2j:C 418 87 0.3514 0.0622 0.2989 0.70 8jej:C, 8jek:C, 8k6j:C, 8k6k:C, 7w2j:F, 7wsq:C, 7wsq:F, 8xcm:C, 8xcn:C
11 8udk:B 369 53 0.2297 0.0461 0.3208 0.79
12 6jlu:V 137 80 0.2838 0.1533 0.2625 0.80 8iwh:V, 8iwh:v, 6j3y:V, 6j3y:v, 6j3z:V, 6j3z:v, 6j40:V, 6j40:v, 8j5k:V, 8j5k:v, 6jlu:v, 7vd5:V, 7vd5:v
13 8gy3:A 440 43 0.2027 0.0341 0.3488 1.2
14 5b6q:A 76 73 0.2973 0.2895 0.3014 1.4 5b6q:B, 6k7c:A, 6k7c:C
15 6ygd:B 720 17 0.1351 0.0139 0.5882 1.8
16 1cr6:B 541 62 0.2568 0.0351 0.3065 1.8 1cr6:A, 1ek1:A, 1ek1:B, 1ek2:A, 1ek2:B
17 4c1t:A 396 33 0.2027 0.0379 0.4545 1.8 4c1u:A, 3zkk:A, 3zkl:A
18 7qhm:C 233 76 0.3378 0.1073 0.3289 1.9 7q21:C, 7q21:c, 7qhm:P, 7qho:C, 7qho:P
19 4yuu:V1 129 78 0.2838 0.1628 0.2692 2.7 4yuu:v1, 4yuu:V2, 4yuu:v2
20 6h5l:B 220 63 0.2703 0.0909 0.3175 3.1
21 8f6b:F 416 35 0.1216 0.0216 0.2571 3.3 8f69:B, 8f69:A, 8f6b:E, 8f6b:A, 8f6b:C
22 8xr6:V 137 32 0.1486 0.0803 0.3438 4.2 8wb4:V, 8wb4:v, 8xr6:v
23 6btm:E 161 65 0.2297 0.1056 0.2615 4.3
24 4yzt:A 512 37 0.1622 0.0234 0.3243 4.7
25 2zzs:A 81 72 0.2703 0.2469 0.2778 4.7 2zzs:B, 2zzs:C, 2zzs:D, 2zzs:E, 2zzs:F, 2zzs:G, 2zzs:H, 2zzs:I, 2zzs:J, 2zzs:K, 2zzs:L, 2zzs:M, 2zzs:N, 2zzs:O, 2zzs:P, 2zzs:Q, 2zzs:R, 2zzs:S, 2zzs:T, 2zzs:U, 2zzs:V, 2zzs:W, 2zzs:X, 2zzs:Y, 2zzs:Z, 2zzs:1, 2zzs:2, 2zzs:3, 2zzs:4, 2zzs:5, 2zzs:6
26 7fco:A 433 37 0.1622 0.0277 0.3243 5.5 7fco:B
27 8snh:G 304 79 0.2703 0.0658 0.2532 5.6
28 6nic:D 360 40 0.1757 0.0361 0.3250 6.2 6nic:A, 6nic:C
29 5n1q:F 260 33 0.2027 0.0577 0.4545 6.5 5n1q:C
30 6u4b:A 570 34 0.1892 0.0246 0.4118 6.6
31 1oc5:A 364 20 0.1351 0.0275 0.5000 7.4 1bvw:A, 2bvw:A, 2bvw:B, 1gz1:A, 1oc7:A, 1ocb:A, 1ocb:B, 1ocj:A, 1ocn:A
32 4j20:A 88 25 0.1486 0.1250 0.4400 9.1 4j20:B
33 1yiq:A 684 71 0.3108 0.0336 0.3239 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417