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BioLiP
>protein
SQKLPQRSHGPKDFLPDGSAAQAERLRRCREELWQLLAEQRVERLGSLVAAEWRPEEGFVELKSPAGKFWQTMGFSEQGR
QRLHPEEALYLLECGSIHLFHQDLPLSIQEAYQLLLTDHTVTFLQYQVFSHLKRLGYVVRRFQPSLEIIFDVYQADAVAT
FRKNNPGKPYARMCISGFDEPVPDLCSLKRLSYQSGDVPLIFALVDHGDISFYSFRDFTL

The query sequence (length=220) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7uxa:D 264 239 0.9955 0.8295 0.9163 2.11e-159 7zrz:CP1
2 8iss:D 289 262 0.9955 0.7578 0.8359 8.97e-156 8hmy:C, 8hmz:C
3 6gjt:E 181 64 0.0955 0.1160 0.3281 0.17 6gjt:A, 6gjt:B, 6gjt:C, 6gjt:D, 6gjt:F
4 2et1:A 201 54 0.0773 0.0846 0.3148 0.63 2et7:A, 2ete:A, 2ete:B, 1fi2:A
5 3d19:A 264 48 0.0727 0.0606 0.3333 3.5 3d19:B, 3d19:C, 3d19:D, 3d19:E, 3d19:F
6 7zkt:B 202 54 0.0864 0.0941 0.3519 4.1 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
7 6yu6:B 446 66 0.0955 0.0471 0.3182 7.7 4us3:A, 4us4:A, 6yu2:A, 6yu2:B, 6yu3:A, 6yu4:A, 6yu5:A, 6yu5:B, 6yu6:A, 6yu7:A
8 3o8o:B 763 19 0.0500 0.0144 0.5789 8.6 3o8o:D, 3o8o:F, 3o8o:H
9 3va8:A 427 64 0.0864 0.0445 0.2969 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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