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BioLiP
>protein
SPYSSDTTSCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLSMS

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6fgp:B 68 68 1.0000 1.0000 1.0000 7.03e-47 1b3a:B, 1b3a:A, 5coy:A, 5dnf:C, 5dnf:D, 5dnf:I, 5dnf:A, 5dnf:F, 5dnf:G, 5dnf:H, 1u4l:A, 1u4m:A
2 7f1t:A 423 66 0.4559 0.0733 0.4697 6.94e-19 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
3 2ra4:B 65 59 0.2794 0.2923 0.3220 5.79e-12
4 2mpm:A 74 61 0.3529 0.3243 0.3934 3.27e-11
5 4r8i:A 68 60 0.2794 0.2794 0.3167 1.60e-07
6 2hci:A 68 60 0.2941 0.2941 0.3333 2.29e-05
7 2nwg:A 68 45 0.2206 0.2206 0.3333 6.31e-04 2nwg:B, 4uai:A
8 6gwi:B 450 41 0.2059 0.0311 0.3415 0.15 6gwi:A
9 1ilp:A 71 57 0.2059 0.1972 0.2456 0.17 1ilq:A, 6xmn:A
10 3hwo:A 379 18 0.1618 0.0290 0.6111 4.0 3hwo:B, 5jxz:A, 5jxz:B, 5jy4:A, 5jy4:B, 5jy8:A, 5jy8:B, 5jzd:A, 5jzd:B
11 6q2m:A 544 22 0.1618 0.0202 0.5000 4.5 1ba3:A, 5dwv:A, 4e5d:A, 4g36:A, 4g36:B, 4g37:A, 4g37:B, 5gyz:A, 5gz2:A, 6hps:A, 6hps:B, 3ies:A, 5kyt:A, 5kyt:B, 5kyv:A, 5kyv:B, 6q2m:B, 6q2m:C, 3rix:A, 5wys:A
12 4v6w:Ac 62 23 0.1176 0.1290 0.3478 6.0 6xu6:Ac, 6xu7:Ac, 6xu8:Ac
13 3e78:A 365 36 0.1618 0.0301 0.3056 7.5 3e79:A, 3eki:A
14 7t80:A 216 32 0.1765 0.0556 0.3750 9.3 7t80:B
15 6edk:A 193 18 0.0882 0.0311 0.3333 9.3 6ci4:A, 6ci5:A
16 5mr0:D 290 32 0.1618 0.0379 0.3438 9.7 5mr0:A, 5mr0:B, 5mr0:C, 5mr0:E, 5mr0:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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