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BioLiP
>protein
SPWPVWSGYALCFVPLAAVILGFIIAARFTDKQATSAYLRLDPAKAN

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8iug:h 47 47 1.0000 1.0000 1.0000 3.21e-29 8iun:h
2 6nbq:K 212 18 0.1915 0.0425 0.5000 3.4 6hum:K, 6khi:K, 6khj:K, 6l7o:K, 6l7p:K, 6nbx:K, 6nby:K, 6tjv:K
3 3ayx:A 595 39 0.2340 0.0185 0.2821 3.5 3ayx:C, 3ayz:A, 3ayz:C, 5y34:A, 5y34:C
4 8sr8:A 1353 23 0.2553 0.0089 0.5217 5.5 8sr8:B, 8sr8:C, 8sr8:D, 8sr9:A, 8sr9:B, 8sr9:C, 8sr9:D, 8sra:A, 8sra:B, 8sra:C, 8sra:D, 8srb:A, 8srb:B, 8srb:C, 8srb:D
5 8sre:A 1377 23 0.2553 0.0087 0.5217 5.6 8sr7:A, 8sr7:B, 8sr7:C, 8sr7:D, 8src:A, 8src:B, 8src:C, 8src:D, 8srd:A, 8srd:B, 8srd:C, 8srd:D, 8sre:B, 8sre:D, 8sre:C, 8srf:A, 8srf:B, 8srf:C, 8srf:D, 8srg:A, 8srg:B, 8srg:C, 8srg:D, 8srh:A, 8srh:B, 8srh:C, 8srh:D, 8sri:A, 8sri:B, 8sri:C, 8sri:D, 8srj:A, 8srj:B, 8srj:D, 8srj:C, 8srk:A, 8srk:B, 8srk:C, 8srk:D
6 3jb9:A 1964 33 0.2340 0.0056 0.3333 5.7
7 7d6v:C 264 35 0.2766 0.0492 0.3714 5.9 7d6x:C
8 7dge:A 784 35 0.2553 0.0153 0.3429 7.1 1ewk:A, 1ewk:B, 1isr:A, 1iss:A, 1iss:B, 3ks9:A, 3ks9:B
9 4or2:B 366 41 0.2766 0.0355 0.3171 9.8 4or2:A
10 1saz:A 375 23 0.2340 0.0293 0.4783 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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