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BioLiP
>protein
SPPKPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCAGCHCVGCKNPHKEDYV

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2lua:A 52 52 1.0000 1.0000 1.0000 3.34e-32 4rkg:B, 4rkh:D, 4rkh:E, 4rkh:C, 4rkh:F
2 4rkg:A 37 44 0.7115 1.0000 0.8409 4.01e-18
3 1q17:C 295 14 0.1346 0.0237 0.5000 4.6 7f4e:A, 7f51:A, 2od2:A, 2od7:A, 2od9:A, 1q14:A, 1q17:A, 1q17:B, 1q1a:A, 2qqf:A, 2qqg:A, 1szc:A, 1szd:A
4 4lmx:E 66 29 0.1346 0.1061 0.2414 5.8 8el3:C, 8el3:I, 8el3:E, 8el3:L, 8el4:C, 8el4:E, 8el5:C, 8el5:I, 8el5:E, 8el5:L, 8el6:C, 8el6:E, 4lmx:A, 4lmx:G, 4lmx:I, 4lmx:K
5 4lmx:C 66 29 0.1346 0.1061 0.2414 6.9 8el3:A, 8el3:J, 8el3:G, 8el3:K, 8el4:A, 8el4:F, 8el5:A, 8el5:J, 8el5:K, 8el5:G, 8el6:A, 8el6:F
6 7qfy:A 388 16 0.1538 0.0206 0.5000 7.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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