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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SPCFVQEDKYLRLAIISFQALCMLLDFVSMLVVYHFRKAKSIRASGLILLETILFGSLLLYFPVVILYFEPSTFRCILLR
WARLLGFATVYGTVTLKLHRVLKVFLSRTAQRIPYMTGGRVMRMLAVILLVVFWFLIGWTSSVCQNLEKQISLIGQGKTS
DHLIFNMCLIDRWDYMTAVAEFLFLLWGVYLCYAVRTVPSAFHEPRYMAVAVHNELIISAIFHTIRFVLASRLQSDWMLM
LYFAHTHLTVTVTIGLLLIPKFSHSSLDPEDIRDELKKLYAQLEIYKRKKMITNNP

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7shf:A 296 296 1.0000 1.0000 1.0000 0.0
2 7she:A 541 265 0.8953 0.4898 1.0000 0.0 7she:B, 7shf:B
3 4or2:B 366 247 0.1892 0.1530 0.2267 3.67e-06 4or2:A
4 7dge:A 784 250 0.1858 0.0702 0.2200 1.63e-05 1ewk:A, 1ewk:B, 1isr:A, 1iss:A, 1iss:B, 3ks9:A, 3ks9:B
5 6n51:B 793 267 0.2095 0.0782 0.2322 8.45e-05 6n4x:B, 6n4y:C, 6n50:A, 6n50:B, 6n50:C, 6n51:A, 8t6j:B, 8t6j:A, 8t7h:A, 8t7h:B, 8t8m:B, 8tao:A
6 8tao:B 771 263 0.2027 0.0778 0.2281 2.13e-04 7fd8:A, 7fd8:B, 7fd9:A, 7fd9:B, 3lmk:A, 3lmk:B, 8t8m:A
7 8jd5:2 785 256 0.2027 0.0764 0.2344 0.002 5cni:A, 5cni:B, 5cnj:A, 5cnj:B, 7e9g:R, 7e9g:S, 8jcu:2, 8jcv:2, 8jcw:2, 8jcx:2, 8jcy:2, 8jcz:2, 8jd0:2, 8jd1:2, 8jd2:2, 8jd3:2, 5kzn:A, 5kzq:A, 7mtr:B, 7mtr:A, 7mts:A, 7mts:B, 4xaq:A, 4xaq:B, 4xas:A, 4xas:B
8 7mtq:B 744 245 0.1791 0.0712 0.2163 0.003 8jd4:2
9 8jcu:3 765 252 0.2061 0.0797 0.2421 0.019 6b7h:A, 5cnk:A, 5cnm:A, 8jcv:3, 8jcw:3, 8jcx:3, 8jcy:3, 8jcz:3, 8jd0:3, 8jd1:3, 8jd2:3, 8jd3:3, 3sm9:A, 8tr0:A, 7wih:A, 7wih:B, 4xar:A
10 6ffh:A 414 79 0.0709 0.0507 0.2658 0.031 5cgc:A, 5cgd:A, 6ffi:A, 4oo9:A, 7p2l:A
11 7epe:A 389 67 0.0676 0.0514 0.2985 0.071 7epf:A
12 7epb:A 779 249 0.1824 0.0693 0.2169 0.46 7epb:B, 7mtq:A
13 8jd6:R 774 64 0.0642 0.0245 0.2969 0.91 7e9h:R, 7e9h:S, 8jd4:4, 8jd5:4, 8jd6:S
14 1esm:A 311 40 0.0574 0.0547 0.4250 3.8 1esm:B, 1esm:C, 1esm:D, 1esn:A, 1esn:B, 1esn:C, 1esn:D, 4f7w:A, 4f7w:C, 4f7w:B, 4f7w:D, 4f7w:E, 4f7w:F, 4f7w:G, 4f7w:H, 4gi7:A, 4gi7:C, 4gi7:B, 4gi7:D, 4gi7:E, 4gi7:F, 4gi7:G, 4gi7:H, 4ne2:A, 4ne2:B, 1sq5:A, 1sq5:B, 1sq5:C, 1sq5:D
15 8tr2:A 745 68 0.0709 0.0282 0.3088 7.1 2e4u:A, 2e4u:B, 2e4v:A, 2e4v:B, 2e4w:A, 2e4w:B, 2e4x:A, 2e4x:B, 2e4y:A, 2e4y:B, 8tqb:A, 8tqb:B, 8tr0:B, 8tr2:B, 8trc:A, 8trc:B, 8trd:A, 8trd:B, 7wi6:A, 7wi6:B, 7wi8:A, 7wi8:B
16 8xqw:M 390 29 0.0473 0.0359 0.4828 7.5 8xqx:M
17 6q2e:A 330 62 0.0507 0.0455 0.2419 9.3 6q2d:A, 6q2d:B, 6q2e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218