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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SPALAQVAVFPALSGKTDAQTLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSS
AMDLQVKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRAEFVDYLERHAKEVHGRIA
TYDIERSGVGFLFMSRDQEQFGDIWSVIKAMGAAGVKVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLP
KDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQLQIPAVSPEVAGENTANTMQAIHGAQLRPVPVSPGLMV
YLDQVKRSRLIERWNEALR

The query sequence (length=339) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3c9h:B 339 339 1.0000 1.0000 1.0000 0.0 3c9h:A
2 7f6e:B 341 320 0.3510 0.3490 0.3719 5.42e-63 7f6e:A, 7f6e:C, 7f6f:A, 7f6f:B, 7f6n:A, 7f6n:B, 7f6n:C, 7f6o:A, 7f6o:B, 7f6q:A, 7f6r:A, 7f6s:A, 7f6u:A
3 2onr:A 314 67 0.0649 0.0701 0.3284 0.37 3cij:A, 3cij:B, 2onk:E, 2onk:J, 2ons:A
4 5c8d:E 280 64 0.0560 0.0679 0.2969 1.6 8c31:A, 8c31:B, 8c31:C, 8c31:D, 8c32:A, 8c32:B, 8c32:C, 8c32:D, 8c33:A, 8c33:B, 8c33:C, 8c33:D, 8c34:A, 8c34:B, 8c34:C, 8c34:D, 8c35:A, 8c35:B, 8c35:C, 8c35:D, 8c36:A, 8c36:B, 8c36:C, 8c36:D, 8c37:A, 8c37:B, 8c37:C, 8c37:D, 8c73:A, 8c73:B, 8c73:C, 8c73:D, 8c76:A, 8c76:B, 8c76:C, 8c76:D, 5c8a:A, 5c8a:B, 5c8a:C, 5c8a:D, 5c8d:A, 5c8d:B, 5c8d:C, 5c8d:D, 5c8d:F, 5c8d:G, 5c8d:H, 5c8e:A, 5c8e:B, 5c8e:C, 5c8e:E, 5c8e:F, 5c8e:G, 5c8e:D, 5c8e:H, 5c8f:A, 3whp:A
5 6mi7:F 217 101 0.0826 0.1290 0.2772 2.9
6 8j4h:A 309 200 0.1268 0.1392 0.2150 3.4 8j4j:A
7 5t1p:D 328 45 0.0324 0.0335 0.2444 7.3 5t1p:A, 5t1p:B, 5t1p:C
8 5l4g:M 415 59 0.0619 0.0506 0.3559 7.5 5m32:g, 6msd:F, 6mse:F, 7qxw:F, 5t0c:AF, 5t0c:BF, 5t0g:F, 5t0h:F, 5t0i:F, 5t0j:F, 7w38:F, 7w39:F, 7w3a:F, 7w3i:F, 7w3j:F, 7w3k:F, 6wjd:F
9 5x49:A 441 55 0.0590 0.0454 0.3636 8.3 5x49:B
10 6msg:F 395 59 0.0619 0.0532 0.3559 8.5 8cvt:F, 5gjq:M, 5gjr:M, 5gjr:0, 6msb:F, 6msh:F, 6msk:F, 7qxn:F, 7qxp:F, 7qxu:F, 7qxx:F, 7qya:F, 7qyb:F, 5vfp:F, 5vfq:F, 5vfr:F, 5vfs:F, 7w37:F, 7w3b:F, 7w3c:F, 7w3g:F, 7w3h:F, 7w3m:F, 6wjn:F
11 5t79:A 315 51 0.0442 0.0476 0.2941 8.5 3erp:A, 3erp:B
12 3j79:G 124 59 0.0501 0.1371 0.2881 8.5 3jbn:AG, 3jbo:AG, 3jbp:AG, 8tpu:AG, 5umd:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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