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BioLiP
>protein
SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEIL
NKRLTEQLREKDT

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2eqb:C 93 93 1.0000 1.0000 1.0000 2.72e-59
2 5d3k:A 269 50 0.1935 0.0669 0.3600 1.2 5d3z:A
3 8her:B 166 39 0.1505 0.0843 0.3590 1.9
4 9fvt:A 519 41 0.1720 0.0308 0.3902 3.9 9fvt:B, 9fvt:C, 9fvt:D
5 4z38:B 439 50 0.1720 0.0364 0.3200 5.5 4z38:A
6 4pso:I 221 29 0.1183 0.0498 0.3793 5.5 4pso:A, 4pso:B, 4pso:C, 4pso:D, 4pso:F, 4pso:G, 4pso:H
7 1zg3:A 358 43 0.1935 0.0503 0.4186 5.9 1zga:A, 1zgj:A, 1zhf:A
8 2j68:A 680 62 0.2366 0.0324 0.3548 6.3 2w6d:A, 2w6d:B
9 5da8:M 463 100 0.2903 0.0583 0.2700 7.3
10 7vzg:a 858 32 0.1183 0.0128 0.3438 8.6 7vzg:A, 7vzr:A, 7vzr:a
11 7tra:A 572 51 0.1828 0.0297 0.3333 9.2
12 6z1p:AH 177 55 0.1613 0.0847 0.2727 9.4
13 6rjr:A 505 38 0.1935 0.0356 0.4737 9.4 6rjr:B, 6rjr:C, 6rjr:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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