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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNRQAALSLYRRALKLALDWTVHRNLWRGQALYIRSLFEKNRNVTDPRLQRALLKETEKLLEKWKHPDPYCPPTAPGGSK
YERNLPVPNLEPPPPLKF

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zm7:R 98 98 1.0000 1.0000 1.0000 4.06e-68 7zm8:R, 7zmb:R, 7zme:R, 7zmg:R, 7zmh:R
2 7b0n:n 108 91 0.4184 0.3796 0.4505 4.61e-24 7o6y:R, 7o71:R, 6rfq:R, 6rfr:R, 6y79:R, 6yj4:n
3 8e73:B9 111 80 0.4184 0.3694 0.5125 8.06e-22
4 7aqw:n 109 80 0.3878 0.3486 0.4750 7.98e-18 7ar7:n, 7ar8:n, 7arb:n, 8beh:n, 8bpx:n, 8bq5:n, 8bq6:n
5 7b93:n 178 83 0.3163 0.1742 0.3735 4.22e-14 7ak5:n, 7ak6:n, 8c2s:n, 8ca3:n, 8ca5:n, 6g2j:n, 6g72:n, 8iao:n, 8iaq:n, 8ib4:n, 8ib6:n, 8ib9:n, 8ibb:n, 8ibd:n, 8ibf:n, 8ic2:n, 8ic4:n, 8olt:n, 8om1:n, 7psa:n, 8pw5:n1, 8pw6:n1, 8pw7:n1, 8rgp:n, 8rgq:n, 8rgr:n, 8rgt:n, 6zr2:n, 6ztq:n
6 7v2c:p 178 83 0.3163 0.1742 0.3735 1.82e-13 5gup:p, 5lnk:t, 8q0a:n, 8q0f:n, 8q0j:n, 8q0m:n, 8q0o:n, 8q0q:n, 8q1p:n, 8q1u:n, 8q1y:n, 8q25:n, 8q45:n, 8q46:n, 8q47:n, 8q48:n, 8q49:n, 8q4a:n, 6q9b:B9, 6qa9:B9, 6qbx:B9, 6qc2:B9, 6qc3:B9, 6qc4:B9, 6qc5:B9, 6qc6:B9, 6qc7:B9, 6qc8:B9, 6qca:B9, 6qcf:B9, 7qsd:n, 7qsk:n, 7qsl:n, 7qsm:n, 7qsn:n, 7qso:n, 7r41:n, 7r42:n, 7r43:n, 7r44:n, 7r45:n, 7r46:n, 7r47:n, 7r48:n, 7r4c:n, 7r4d:n, 7r4f:n, 7r4g:n, 8ud1:1n, 8ueo:1n, 8uep:1n, 8ueq:1n, 8uer:1n, 8ues:1n, 8uet:1n, 8ueu:1n, 8uev:1n, 8uew:1n, 8uex:1n, 8uey:1n, 8uez:1n, 8ugh:1n, 8ugi:1n, 8ugj:1n, 8ugn:1n, 8ugn:5n, 8ugr:1n, 8ugr:5n, 7v2d:p, 7v2e:p, 7v2f:p, 7v2h:p, 7v2k:p, 7v2r:p, 7v30:p, 7v31:p, 7v32:p, 7v33:p, 7v3m:p, 7vbl:p, 7vbp:p, 7vc0:p, 7vwl:p, 7vxs:p, 7vy1:p, 7vy9:p, 7vye:p, 7vyg:p, 7vyi:p, 7vys:p, 7vz8:p, 7vzv:p, 7vzw:p, 7w00:p, 7w0h:p, 7w0r:p, 7w0y:p, 7w1o:p, 7w1p:p, 7w1t:p, 7w1u:p, 7w1v:p, 7w1z:p, 7w20:p, 7w2k:p, 7w2l:p, 7w2r:p, 7w2u:p, 7w2y:p, 7w31:p, 7w32:p, 7w35:p, 7w4c:p, 7w4d:p, 7w4e:p, 7w4f:p, 7w4g:p, 7w4j:p, 7w4k:p, 7w4l:p, 7w4m:p, 7w4n:p, 7w4q:p, 5xtc:p, 5xtd:p, 5xth:p, 5xti:p, 5xti:Bp, 7zd6:t, 7zdh:t, 7zdj:t, 7zdm:t, 7zdp:t, 7zeb:t, 6zka:t, 6zkb:t, 6zkc:t, 6zkd:t, 6zke:t, 6zkf:t, 6zkg:t, 6zkh:t, 6zki:t, 6zkj:t, 6zkk:t, 6zkl:t, 6zkm:t, 6zkn:t, 6zko:t, 6zkp:t, 6zkq:t, 6zkr:t, 6zks:t, 6zkt:t, 6zku:t, 6zkv:t
7 8b9z:n 134 89 0.2755 0.2015 0.3034 2.81e-06 8ba0:n, 8esw:B9, 8esz:B9
8 7ar9:n 120 76 0.2245 0.1833 0.2895 6.75e-06 7ard:n
9 8kg8:4 697 22 0.1327 0.0187 0.5909 0.29 8b9a:4, 8b9b:4, 8b9c:4, 8kg6:4, 8p5e:4, 8p62:4, 8p63:4, 7pmk:4, 7pmn:4, 7qhs:4, 6sko:4, 8w7m:4, 7z13:4, 7z13:c
10 6skl:4 679 22 0.1327 0.0191 0.5909 0.32 8kg9:4, 8xgc:4
11 5v8f:4 741 22 0.1327 0.0175 0.5909 0.33 5bk4:C, 5bk4:4, 6eyc:4, 6f0l:C, 3ja8:4, 7p30:4, 7p30:C, 7p5z:C, 7p5z:4, 7pt6:4, 7pt6:D, 7pt7:4, 7pt7:D, 6rqc:4, 7v3u:4, 7v3u:D, 7v3v:4, 7v3v:D, 7w8g:4, 7w8g:D
12 1uv4:A 291 38 0.1327 0.0447 0.3421 0.38
13 8q0f:W 116 36 0.1327 0.1121 0.3611 0.76 7ak5:W, 7ak6:W, 7b93:W, 8c2s:W, 8ca3:W, 8ca5:W, 6g2j:W, 6g72:W, 5gup:Q, 8iao:W, 8iap:W, 8ib4:W, 8ib5:W, 8ib9:W, 8iba:W, 8ibd:W, 8ibe:W, 8ic2:W, 8ic3:W, 5lnk:g, 8olt:W, 8om1:W, 7psa:W, 8pw5:W1, 8pw6:W1, 8pw7:W1, 8q0a:W, 8q0j:W, 8q0m:W, 8q0o:W, 8q0q:W, 8q1p:W, 8q1u:W, 8q1y:W, 8q25:W, 8q45:W, 8q46:W, 8q47:W, 8q48:W, 8q49:W, 8q4a:W, 6q9d:A6, 6qa9:A6, 6qbx:A6, 6qc2:A6, 6qc3:A6, 6qc4:A6, 6qc5:A6, 6qc6:A6, 6qc7:A6, 6qc8:A6, 6qc9:A6, 6qca:A6, 6qcf:A6, 7qsd:W, 7qsk:W, 7qsl:W, 7qsm:W, 7qsn:W, 7qso:W, 7r41:W, 7r42:W, 7r43:W, 7r44:W, 7r45:W, 7r46:W, 7r47:W, 7r48:W, 7r4c:W, 7r4d:W, 7r4f:W, 7r4g:W, 8rgp:W, 8rgq:W, 8rgr:W, 8rgt:W, 8ud1:1W, 8ueo:1W, 8uep:1W, 8ueq:1W, 8uer:1W, 8ues:1W, 8uet:1W, 8ueu:1W, 8uev:1W, 8uew:1W, 8uex:1W, 8uey:1W, 8uez:1W, 8ugh:1W, 8ugi:1W, 8ugj:1W, 8ugn:1W, 8ugn:5W, 8ugr:1W, 8ugr:5W, 7v2c:E, 7v2d:E, 7v2e:E, 7v2f:E, 7v2h:E, 7v2k:E, 7v2r:E, 7v30:E, 7v31:E, 7v32:E, 7v33:E, 7v3m:E, 7vb7:E, 7vbn:E, 7vbz:E, 7vwj:E, 7vxp:E, 7vxu:E, 7vy8:E, 7vya:E, 7vyf:E, 7vyh:E, 7vyn:E, 7vz1:E, 7vzv:E, 7vzw:E, 7w00:E, 7w0h:E, 7w0r:E, 7w0y:E, 7w1o:E, 7w1p:E, 7w1t:E, 7w1u:E, 7w1v:E, 7w1z:E, 7w20:E, 7w2k:E, 7w2l:E, 7w2r:E, 7w2u:E, 7w2y:E, 7w31:E, 7w32:E, 7w35:E, 7w4c:E, 7w4d:E, 7w4e:E, 7w4f:E, 7w4g:E, 7w4j:E, 7w4k:E, 7w4l:E, 7w4m:E, 7w4n:E, 7w4q:E, 5xtb:E, 5xtd:E, 5xth:E, 5xti:E, 5xti:BE, 7zd6:g, 7zdh:g, 7zdj:g, 7zdm:g, 7zdp:g, 7zeb:g, 6zk9:g, 6zkc:g, 6zkd:g, 6zke:g, 6zkf:g, 6zkg:g, 6zkh:g, 6zki:g, 6zkj:g, 6zkk:g, 6zkl:g, 6zkm:g, 6zkn:g, 6zko:g, 6zkp:g, 6zkq:g, 6zkr:g, 6zks:g, 6zkt:g, 6zku:g, 6zkv:g, 6zr2:W, 6ztq:W
14 8fn6:2 428 20 0.1122 0.0257 0.5500 2.6
15 6uxe:B 85 48 0.1735 0.2000 0.3542 2.8 6nzu:B, 6nzu:F, 6odd:B, 8pk8:B, 8pk9:B, 8pka:B, 7rtk:B, 8tvt:B, 5usr:F, 5usr:H, 5usr:B, 5usr:D, 6w1d:B, 5wgb:B, 6wi2:B, 6wih:B, 5wkp:B, 5wkp:F, 5wlw:B, 5wlw:F
16 7ood:e 176 32 0.1020 0.0568 0.3125 4.6 7p6z:e, 7pah:e, 7pai:e, 7paj:e, 7pak:e, 7pal:e, 7pam:e, 7pan:e, 7pao:e, 7paq:e, 7par:e, 7pas:e, 7pat:e, 7pau:e, 7ph9:e, 7pha:e, 7phb:e, 7phc:e, 7pi8:e, 7pi9:e, 7pia:e, 7pib:e, 7pic:e, 7pio:e, 7pip:e, 7piq:e, 7pir:e, 7pis:e, 7pit:e
17 8bif:A 318 48 0.1633 0.0503 0.3333 5.8 8bif:B, 8bif:C, 8bif:D
18 8i23:C 1164 63 0.2245 0.0189 0.3492 5.9 8i24:C
19 1iaj:A 253 43 0.1429 0.0553 0.3256 6.1
20 3tk1:B 319 34 0.1020 0.0313 0.2941 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218