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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNPKDDYKIWLVINPSTWLPVIWIVALLTAIAVHSFVLSVPGYNFLASAAAKTAAK

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fb9:A 56 56 1.0000 1.0000 1.0000 2.37e-34 8fb9:D, 8fb9:C, 8fb9:G, 8fb9:I, 8fb9:K, 8fb9:c, 8fb9:e, 8fbb:Q, 8fbb:S, 8fbb:U, 8fbb:W, 8fbb:Y, 8fbb:a, 8fbb:c, 8fbb:e, 7tuw:A, 7tuw:D, 7tuw:C, 7tuw:G, 7tuw:I, 7tuw:K, 7tuw:c, 7tuw:e, 7tv3:Q, 7tv3:S, 7tv3:U, 7tv3:W, 7tv3:Y, 7tv3:a, 7tv3:c, 7tv3:e
2 8fb9:M 56 56 0.7679 0.7679 0.7679 6.50e-18 8fb9:O, 8fb9:Q, 8fb9:S, 8fb9:U, 8fb9:W, 8fb9:Y, 8fb9:a, 8fbb:g, 8fbb:C, 8fbb:D, 8fbb:G, 8fbb:I, 8fbb:K, 8fbb:M, 8fbb:O, 1lgh:A, 1lgh:D, 1lgh:G, 1lgh:J, 7tuw:M, 7tuw:O, 7tuw:Q, 7tuw:S, 7tuw:U, 7tuw:W, 7tuw:Y, 7tuw:a, 7tv3:A, 7tv3:C, 7tv3:D, 7tv3:G, 7tv3:I, 7tv3:K, 7tv3:M, 7tv3:O
3 6q53:D 57 44 0.4464 0.4386 0.5682 4.11e-12 6q53:A
4 6zxa:A 69 55 0.3929 0.3188 0.4000 3.45e-10 6zxa:C, 6zxa:M, 6zxa:E, 6zxa:G, 6zxa:I, 6zxa:K
5 7pil:AB 55 46 0.3036 0.3091 0.3696 3.95e-05 7f0l:A, 7f0l:D, 7f0l:F, 7f0l:I, 7f0l:K, 7f0l:O, 7f0l:Q, 7f0l:S, 7f0l:V, 7f0l:Y, 7f0l:1, 7f0l:3, 7f0l:5, 7f0l:7, 7pil:AA, 7pil:AC, 7pil:AD, 7pil:AE, 7pil:AF, 7pil:AG, 7pil:AH, 7pil:AI, 7pil:AJ, 7pil:AK, 7pil:AL, 7pil:AM, 7pil:AN, 7pqd:AA, 7pqd:AB, 7pqd:AC, 7pqd:AD, 7pqd:AE, 7pqd:AF, 7pqd:AG, 7pqd:AH, 7pqd:AI, 7pqd:AJ, 7pqd:AK, 7pqd:AL, 7pqd:AM, 7pqd:AN, 7pqd:aa, 7pqd:ab, 7pqd:ac, 7pqd:ad, 7pqd:ae, 7pqd:af, 7pqd:ag, 7pqd:ah, 7pqd:ai, 7pqd:aj, 7pqd:ak, 7pqd:al, 7pqd:am, 7pqd:an, 4v9g:AT, 4v9g:AV, 4v9g:A3, 4v9g:A7, 4v9g:AD, 4v9g:AF, 4v9g:A1, 4v9g:AJ, 4v9g:A2, 4v9g:AN, 4v9g:AP, 4v9g:AZ, 4v9g:A5, 4v9g:AX, 4v9g:B5, 4v9g:BT, 4v9g:BV, 4v9g:B3, 4v9g:B7, 4v9g:BD, 4v9g:BF, 4v9g:B1, 4v9g:B2, 4v9g:BP, 4v9g:BZ, 4v9g:BN, 4v9g:BX, 4v9g:BJ, 7va9:A, 7va9:9, 7va9:D, 7va9:F, 7va9:I, 7va9:K, 7va9:O, 7va9:Q, 7va9:S, 7va9:U, 7va9:W, 7va9:Y, 7va9:1, 7va9:7, 7va9:a, 7va9:3, 7va9:d, 7va9:f, 7va9:i, 7va9:k, 7va9:o, 7va9:q, 7va9:s, 7va9:u, 7va9:w, 7va9:y, 7va9:5, 7va9:6, 7vb9:A, 7vb9:9, 7vb9:D, 7vb9:F, 7vb9:I, 7vb9:K, 7vb9:O, 7vb9:7, 7vb9:a, 7vb9:d, 7vb9:f, 7vb9:i, 7vb9:k, 7vb9:o, 7vb9:q, 7vb9:s, 7vb9:u, 7vb9:w, 7vb9:y, 7vb9:5, 7vb9:6, 7vb9:Q, 7vnm:A, 7vnm:9, 7vnm:D, 7vnm:F, 7vnm:I, 7vnm:O, 7vnm:K, 7vnm:Q, 7vnm:S, 7vnm:U, 7vnm:W, 7vnm:7, 7vnm:1, 7vny:A, 7vny:D, 7vny:9, 7vny:F, 7vny:I, 7vny:K, 7vny:O, 7vny:Q, 7vny:S, 7vny:U, 7vny:W, 7vny:3, 7vny:1, 7vny:7, 7vor:A, 7vor:9, 7vor:D, 7vor:F, 7vor:I, 7vor:K, 7vor:O, 7vor:Q, 7vor:S, 7vor:U, 7vor:W, 7vor:3, 7vor:1, 7vor:7, 7vor:a, 7vor:b9, 7vor:d, 7vor:f, 7vor:i, 7vor:k, 7vor:o, 7vor:q, 7vor:s, 7vor:u, 7vor:w, 7vor:5, 7vor:b1, 7vor:6, 7vot:A, 7vot:9, 7vot:D, 7vot:F, 7vot:I, 7vot:K, 7vot:O, 7vot:Q, 7vot:S, 7vot:U, 7vot:W, 7vot:3, 7vot:1, 7vot:7, 7vot:a, 7vot:b9, 7vot:d, 7vot:f, 7vot:i, 7vot:k, 7vot:o, 7vot:q, 7vot:s, 7vot:u, 7vot:w, 7vot:5, 7vot:b1, 7vot:6, 7voy:A, 7voy:D, 7voy:F, 7voy:I, 7voy:K, 7voy:O, 7voy:Q, 7voy:S, 7voy:U, 7voy:W, 7voy:Y, 7voy:1, 7voy:7, 7voy:9, 7voy:4, 7voy:6, 7voy:C, 7vy2:A, 7vy2:D, 7vy2:F, 7vy2:I, 7vy2:K, 7vy2:O, 7vy2:Q, 7vy2:S, 7vy2:V, 7vy2:Y, 7vy2:1, 7vy2:3, 7vy2:5, 7vy2:7, 7vy2:a, 7vy2:d, 7vy2:f, 7vy2:i, 7vy2:k, 7vy2:o, 7vy2:q, 7vy2:s, 7vy2:v, 7vy2:y, 7vy2:01, 7vy2:03, 7vy2:05, 7vy2:07, 7vy3:Y, 7vy3:A, 7vy3:D, 7vy3:F, 7vy3:I, 7vy3:K, 7vy3:O, 7vy3:Q, 7vy3:S, 7vy3:V
6 7yml:D 56 46 0.3214 0.3214 0.3913 1.04e-04 8b64:a, 8b64:e, 8b64:d, 8b64:b, 8b64:f, 8b64:t, 8b64:u, 8b64:s, 8b64:r, 8b64:o, 8b64:n, 8b64:k, 8b64:j, 8b64:i, 8b64:g, 7yml:A, 7yml:F, 7yml:I, 7yml:K, 7yml:O, 7yml:Q, 7yml:S, 7yml:V, 7yml:Y
7 7ddq:o 53 46 0.2857 0.3019 0.3478 1.33e-04 7ddq:n, 7ddq:t, 7ddq:s, 7ddq:u, 7ddq:r, 7ddq:a, 7ddq:b, 7ddq:e, 7ddq:d, 7ddq:k, 7ddq:j, 7ddq:f, 7ddq:i, 7ddq:g
8 7vrj:3 65 46 0.3214 0.2769 0.3913 0.002 8wdu:3, 8wdv:3
9 7vrj:Y 63 45 0.2500 0.2222 0.3111 0.021 7vrj:D, 7vrj:F, 7vrj:W
10 8wdv:Y 64 45 0.2321 0.2031 0.2889 0.058 7vrj:S, 7vrj:U, 8wdu:U, 8wdu:W, 8wdu:D, 8wdu:F, 8wdu:S, 8wdu:Y, 8wdv:W, 8wdv:D, 8wdv:F, 8wdv:S, 8wdv:U
11 7pbw:AA 50 35 0.1964 0.2200 0.3143 0.11 7pbw:AB, 7pbw:AC, 7pbw:AD, 7pbw:AE, 7pbw:AF, 7pbw:AG, 7pbw:AH, 7pbw:AI
12 6z5r:T 48 45 0.2321 0.2708 0.2889 0.18 6z5r:C, 6z5r:E, 6z5r:A, 6z5r:G, 6z5r:J, 6z5r:N, 6z5r:P, 6z5r:9, 6z5r:R, 6z5r:V, 6z5r:Y, 6z5r:1, 6z5r:3, 6z5r:5, 6z5r:7, 6z5s:R, 6z5s:1, 6z5s:Y, 6z5s:3, 6z5s:5, 6z5s:V, 6z5s:T, 6z5s:A, 6z5s:C, 6z5s:E, 6z5s:P, 6z5s:N, 6z5s:J, 6z5s:G
13 7c9r:5 74 33 0.1964 0.1486 0.3333 0.19 7c9r:A, 7c9r:D, 7c9r:F, 7c9r:I, 7c9r:K, 7c9r:O, 7c9r:S, 7c9r:U, 7c9r:W, 7c9r:Y, 7c9r:1, 7c9r:3, 7c9r:7
14 7vrj:7 44 43 0.1964 0.2500 0.2558 0.24 7vrj:A, 7vrj:9, 7vrj:I, 7vrj:K, 7vrj:O, 7vrj:Q, 7vrj:1, 7vrj:5, 8wdu:7, 8wdu:9, 8wdu:O, 8wdu:A, 8wdu:I, 8wdu:K, 8wdu:Q, 8wdu:1, 8wdu:5, 8wdv:7, 8wdv:O, 8wdv:A, 8wdv:9, 8wdv:I, 8wdv:K, 8wdv:Q, 8wdv:1, 8wdv:5
15 7zdi:A 49 35 0.2500 0.2857 0.4000 0.25 7zdi:C, 7zdi:E, 7zdi:Q, 7zdi:G, 7zdi:I, 7zdi:K, 7zdi:M, 7zdi:O
16 1ijd:A 46 35 0.2321 0.2826 0.3714 0.47 1ijd:C, 1ijd:E
17 5b5m:A 60 33 0.2143 0.2000 0.3636 0.61 5b5m:9, 5b5m:D, 5b5m:F, 5b5m:I, 5b5m:K, 5b5m:O, 5b5m:Q, 5b5m:S, 5b5m:U, 5b5m:W, 5b5m:Y, 5b5m:1, 5b5m:3, 5b5m:5, 5b5m:7, 5b5m:AA, 5b5m:m, 5b5m:l, 5b5m:p, 5b5m:r, 5b5m:u, 5b5m:w, 5b5m:AC, 5b5m:AE, 5b5m:AG, 5b5m:AI, 5b5m:AK, 5b5m:d, 5b5m:f, 5b5m:h, 5b5m:j, 5b5n:A, 5b5n:9, 5b5n:D, 5b5n:F, 5b5n:I, 5b5n:K, 5b5n:O, 5b5n:Q, 5b5n:S, 5b5n:U, 5b5n:W, 5b5n:Y, 5b5n:1, 5b5n:3, 5b5n:5, 5b5n:7, 5b5n:AA, 5b5n:m, 5b5n:j, 5b5n:l, 5b5n:p, 5b5n:r, 5b5n:u, 5b5n:w, 5b5n:AC, 5b5n:AE, 5b5n:AG, 5b5n:AI, 5b5n:AK, 5b5n:d, 5b5n:f, 5b5n:h, 7c52:7, 7c52:S, 7c52:A, 7c52:D, 7c52:F, 7c52:9, 7c52:I, 7c52:K, 7c52:O, 7c52:Q, 7c52:U, 7c52:W, 7c52:Y, 7c52:1, 7c52:3, 7c52:5, 4v8k:AA, 4v8k:AD, 4v8k:A9, 4v8k:AF, 4v8k:AI, 4v8k:AK, 4v8k:AO, 4v8k:AQ, 4v8k:AS, 4v8k:AW, 4v8k:AU, 4v8k:AY, 4v8k:A1, 4v8k:A3, 4v8k:A5, 4v8k:A7, 4v8k:BA, 4v8k:BD, 4v8k:B9, 4v8k:BF, 4v8k:BI, 4v8k:BK, 4v8k:BO, 4v8k:BQ, 4v8k:BS, 4v8k:BU, 4v8k:BW, 4v8k:BY, 4v8k:B1, 4v8k:B3, 4v8k:B5, 4v8k:B7, 3wmm:A, 3wmm:7, 3wmm:9, 3wmm:D, 3wmm:F, 3wmm:I, 3wmm:K, 3wmm:O, 3wmm:Q, 3wmm:S, 3wmm:U, 3wmm:W, 3wmm:Y, 3wmm:1, 3wmm:3, 3wmm:5, 5y5s:7, 5y5s:S, 5y5s:A, 5y5s:D, 5y5s:F, 5y5s:I, 5y5s:K, 5y5s:O, 5y5s:Q, 5y5s:U, 5y5s:W, 5y5s:Y, 5y5s:1, 5y5s:3, 5y5s:5, 5y5s:9
18 7c9r:Q 78 33 0.2143 0.1538 0.3636 0.78
19 2fkw:A 53 35 0.2321 0.2453 0.3714 0.96 2fkw:C, 2fkw:E, 2fkw:G, 2fkw:I, 2fkw:K, 2fkw:M, 2fkw:O, 2fkw:R, 1kzu:A, 1kzu:D, 1kzu:G, 1nkz:A, 1nkz:C, 1nkz:E
20 7oy8:8 48 46 0.2143 0.2500 0.2609 0.96 7eqd:A, 7eqd:D, 7eqd:9, 7eqd:F, 7eqd:I, 7eqd:K, 7eqd:O, 7eqd:Q, 7eqd:S, 7eqd:U, 7eqd:W, 7eqd:Y, 7eqd:1, 7eqd:3, 7eqd:5, 7eqd:7, 7oy8:Z, 7oy8:X, 7oy8:2, 7oy8:4, 7oy8:6, 7oy8:D, 7oy8:A, 7oy8:E, 7oy8:F, 7oy8:G, 7oy8:J, 7oy8:N, 7oy8:R, 7oy8:T, 7oy8:V
21 7xxf:S 58 40 0.1786 0.1724 0.2500 2.0 7xxf:9, 7xxf:D, 7xxf:A, 7xxf:F, 7xxf:I, 7xxf:K, 7xxf:O, 7xxf:Q, 7xxf:U, 7xxf:W, 7xxf:Y, 7xxf:1, 7xxf:3, 7xxf:5, 7xxf:7
22 7zcu:A 50 35 0.2321 0.2600 0.3714 2.3 7zcu:C, 7zcu:E, 7zcu:Q, 7zcu:G, 7zcu:I, 7zcu:K, 7zcu:M, 7zcu:O, 7ze8:A, 7ze8:Q, 7ze8:O, 7ze8:C, 7ze8:E, 7ze8:G, 7ze8:I, 7ze8:K, 7ze8:M
23 8act:A 873 30 0.1964 0.0126 0.3667 2.7 8act:B, 9f6c:B, 8qyp:A, 8qyq:A, 8qyq:B, 8qyr:B
24 4pa0:B 920 30 0.1964 0.0120 0.3667 2.7 8qyu:B
25 4pa0:A 974 30 0.1964 0.0113 0.3667 2.7 4db1:A, 4db1:B, 8efe:A, 8efh:A, 9f6c:A, 6fsa:A, 6fsa:B, 5n69:A, 5n69:B, 5n6a:A, 8qyu:A
26 7c9r:9 84 33 0.1964 0.1310 0.3333 4.5
27 6klc:A 1436 34 0.2143 0.0084 0.3529 5.4
28 6ysy:A 767 30 0.1786 0.0130 0.3333 6.3
29 7q3s:A 453 17 0.1964 0.0243 0.6471 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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