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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNANDAAEVALYERLLQLRVLPGASDVHDVRFVFGDDSRCWIEVAMHGDHVIGNSHPALDPKSRATLEHVLTVQGDLAAF
LVVARDMLLASL

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5t6j:B 92 92 1.0000 1.0000 1.0000 2.98e-63 4geq:C, 4geq:A
2 5jy9:B 424 28 0.1304 0.0283 0.4286 1.0 2fn0:A, 2fn0:B, 2fn1:A, 2fn1:B, 5jy9:A
3 4p7a:A 303 34 0.1522 0.0462 0.4118 1.1
4 3vsu:A 638 63 0.2283 0.0329 0.3333 1.6 3vsu:B, 3vsu:C, 3vsu:D, 3vsv:A, 3vsv:B, 3vsv:D, 3vsv:C
5 8swy:A 248 48 0.1522 0.0565 0.2917 1.9 8swy:B, 8swz:A, 8swz:B
6 8r9b:A 301 70 0.2065 0.0631 0.2714 5.7 7b5o:J, 7b5q:J, 8orm:J, 8p4z:A, 8p4z:B, 8p6v:J, 8p6w:J, 8p6x:J, 8p6y:J, 8p6z:J, 8p70:J, 8p71:J, 8p72:J, 8p73:J, 8p74:J, 8p75:J, 8p76:J, 8p77:J, 8p78:J, 8p7l:J, 8plz:J, 8r99:A, 8r9a:A, 8r9b:B, 8r9b:C, 8r9b:D, 8r9o:A, 8r9o:B, 8r9s:A, 8r9s:B, 8r9u:A, 8r9u:B, 1ua2:A, 1ua2:B, 1ua2:C, 1ua2:D, 6xbz:J, 6xd3:J
7 5zvc:B 311 40 0.1413 0.0418 0.3250 6.3 6jyn:A, 6jyn:B, 6jyn:C, 6jyn:D, 6jys:A, 6jys:B, 6jys:C, 6jys:D, 5zvc:A
8 5iyp:B 306 35 0.1413 0.0425 0.3714 6.8 5iyp:A, 5iyq:A, 5iyq:B, 5iyr:A, 5iyr:B, 5iyw:A, 5iyw:B
9 2e7u:A 424 42 0.1413 0.0307 0.3095 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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