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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNAMHIRDMLAEAERTGEPSFSFEYFPPKTAQGVQNLYDRMERMYNYGPKFIDITWGAGGRVAELTCEMVVQAQAYLGLE
TCMHLTCTDMGVERINDALRKAYKAGCTNILALRGDPPRDKEKWEAAKDGFRYAKDLVAHIRKEYGDHFDIGVAGYPEGC
DDNKDEDLLLDHLKEKVDMGAGFIVTQMFYDVDNFLRWVKKVRERGISVPIVPGIMPIATYASFLRRANHMKCKIPEEWM
AKLEPVKNDDVAVREIGKTLVADMCRKILDAGIRHLHFYTMNLAQATRMVLEELNWLPQDWDEFPNGRWGDSRSPAFGEL
DAYGVGLTGSNEQNRERWGEPKCIRDIANLFIRYLRKEIDYLPWSEAPVADEADLIKDELIDLNRRGLITVNSQPAVNGA
KSNHPVHGWGPSNGYVYQKAYLEFFVSPELYPEIKRRIESHPDLTYHAVTKSGNLETNAQSDGPNAVTWGVFPGKEIVQP
TIVERISFLAWKDEAYHLGMEWARCYDAGSPSRVLLEEMMNTWWLVNIVNNDFHQGNTLFEILKGLEVTDLDKVP

The query sequence (length=555) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8uy2:D 557 556 1.0000 0.9964 0.9982 0.0 8uy2:A, 8uy2:B, 8uy2:C
2 8uy1:A 598 596 0.9946 0.9231 0.9262 0.0 8uy1:D, 8uy1:B, 8uy1:C
3 8qa6:A 553 557 0.4342 0.4358 0.4327 1.08e-157 8qa6:B
4 6fcx:A 596 595 0.4324 0.4027 0.4034 2.03e-144 6fcx:B, 8qa4:A, 8qa4:B, 8qa5:A, 8qa5:B
5 6fnu:A 296 297 0.2288 0.4291 0.4276 9.23e-73
6 3apt:A 292 295 0.2090 0.3973 0.3932 1.65e-68 3apy:A, 3apy:B, 3apy:C, 3apy:D, 3apy:E, 3apy:F, 3apy:G, 3apy:H, 8eac:A, 7th4:A, 7th4:B, 7th5:A, 7th5:B, 1v93:A
7 6pey:B 290 295 0.1820 0.3483 0.3424 2.53e-48 1b5t:A, 1b5t:B, 1b5t:C, 2fmn:A, 2fmn:B, 2fmn:C, 2fmo:A, 2fmo:B, 2fmo:C, 3fst:A, 3fst:C, 3fst:E, 3fsu:A, 3fsu:C, 3fsu:E, 6pey:A, 6pey:C, 1zp3:A, 1zp3:B, 1zp3:C, 1zp4:A, 1zp4:B, 1zp4:C, 1zpt:A, 1zpt:B, 1zpt:C, 1zrq:A, 1zrq:B, 1zrq:C
8 5ume:E 292 277 0.1658 0.3151 0.3321 2.21e-43 5ume:A, 5ume:B, 5ume:C, 5ume:D, 5ume:F
9 7rml:A 281 284 0.1658 0.3274 0.3239 3.13e-42 7rml:B, 7rml:C
10 7xg9:A 286 150 0.0865 0.1678 0.3200 9.66e-07 7xg9:B, 7xlf:A, 7xlf:B
11 7fgz:A 260 39 0.0288 0.0615 0.4103 0.57
12 1egy:A 403 95 0.0468 0.0645 0.2737 1.4 1eup:A, 1jin:A, 1jio:A, 1jip:A, 1oxa:A, 1z8o:A, 1z8p:A, 1z8q:A
13 3qy6:A 247 144 0.0649 0.1457 0.2500 5.2 3qy7:A
14 1e8u:B 449 60 0.0288 0.0356 0.2667 6.6 7bwu:B, 7bwu:D, 7bwu:A, 7bwu:C, 1e8t:A, 1e8u:A, 1e8v:A, 1e8v:B, 1usr:A, 1usr:B, 1usx:A, 1usx:B, 1usx:C
15 6s04:B 497 58 0.0396 0.0443 0.3793 7.0 6s00:A, 6s00:B, 6s04:A, 6s0e:A, 6s0e:B, 6s0f:A, 6s0f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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