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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNAMHDALQSILAIQELDIKMIRLMRVKKEHQNELAKIQALKTDIRRKVEEKEQEMEKLKDQIKGGEKRIQEISDQINKL
ENQQAAVKKMDEFNALTQEMTAANKERRTLEHQLSDLMDKQAGSEDLLISLKESLSSTENSSSAIEEEIRENIRKINEEG
RSLLSQRTQLKETTDPELFSVYERLLNNKKDRVVVPIENRVCSGCHIALTPQHENLVRKQDHLVFCEHCSRILYWQ

The query sequence (length=236) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ilo:A 236 236 1.0000 1.0000 1.0000 6.42e-174 4ilo:B
2 3na7:A 237 231 0.2458 0.2447 0.2511 5.12e-12
3 6z11:D 1254 57 0.0890 0.0167 0.3684 0.78 6ccv:D, 6eyd:D, 6f6w:D, 5tw1:D, 5vi5:D, 5vi8:D, 6vvs:D
4 6vvt:D 1200 57 0.0890 0.0175 0.3684 0.83
5 6dcf:D 1176 57 0.0890 0.0179 0.3684 0.86 6vvv:D
6 6cce:D 1195 57 0.0890 0.0176 0.3684 0.86
7 6mn8:A 399 64 0.0678 0.0401 0.2500 1.3
8 1bg1:A 559 78 0.0890 0.0376 0.2692 1.8 4e68:A, 6njs:A, 6nuq:A, 6qhd:A
9 8hvr:D 1259 58 0.0847 0.0159 0.3448 2.8 8dy7:D, 8dy9:D, 8jke:D, 8k60:D, 7vpd:D, 7vpz:D, 7x74:D, 7x75:D, 7x76:D
10 1e1c:A 727 78 0.0975 0.0316 0.2949 2.8 1e1c:C, 1req:A, 1req:C, 2req:A, 2req:C, 3req:A, 4req:A, 4req:C, 5req:A, 5req:C, 6req:A, 6req:C, 7req:A, 7req:C
11 2ajr:A 320 91 0.1017 0.0750 0.2637 3.0 2ajr:B
12 6wmp:D 1159 166 0.1525 0.0311 0.2169 3.0 6wmr:D, 6wmt:D
13 6xyw:Bw 337 70 0.0932 0.0653 0.3143 3.5
14 6ppn:H 94 58 0.0551 0.1383 0.2241 3.9 6ppn:P, 6ppp:H, 6ppp:P
15 4wqs:D 1151 147 0.1525 0.0313 0.2449 5.4
16 4j7c:B 217 60 0.0763 0.0829 0.3000 6.3 2hms:A, 2hms:B, 2hms:C, 2hms:D, 2hmt:A, 2hmt:B, 2hmu:A, 2hmu:B, 2hmv:A, 2hmv:B, 2hmw:A, 2hmw:B, 4j7c:A, 4j7c:C, 4j7c:D, 4j7c:E, 4j7c:F, 4j7c:G, 4j7c:H, 4j90:A, 4j90:B, 4j91:A, 4j91:B, 4j91:C, 4j91:D, 8k16:A, 8k16:B, 8k1k:A, 8k1k:B, 8k1s:A, 8k1s:B, 8k1s:C, 8k1s:D, 8k1s:E, 8k1s:F, 8k1s:G, 8k1s:H, 8k1t:A, 8k1t:B, 8k1t:C, 8k1t:D, 8k1t:E, 8k1t:F, 8k1t:G, 8k1t:H, 8k1u:A, 8k1u:B, 8k1u:C, 8k1u:D, 8k1u:E, 8k1u:F, 8k1u:G, 8k1u:H, 1lsu:A, 1lsu:B, 6s2j:A, 6s2j:B, 6s5b:A, 6s5b:B, 6s5b:C, 6s5b:D, 6s5b:E, 6s5b:F, 6s5b:G, 6s5b:H, 6s5c:A, 6s5c:B, 6s5d:A, 6s5d:B, 6s5e:A, 6s5e:B, 6s5e:C, 6s5e:D, 6s5e:E, 6s5e:F, 6s5e:G, 6s5e:H, 6s5g:A, 6s5g:B, 6s5g:C, 6s5g:D, 6s5g:E, 6s5g:F, 6s5g:G, 6s5g:H, 6s5n:A, 6s5n:B, 6s5n:C, 6s5n:D, 6s5n:E, 6s5n:F, 6s5n:G, 6s5n:H, 6s5o:A, 6s5o:B, 6s5o:C, 6s5o:D, 6s5o:E, 6s5o:F, 6s5o:G, 6s5o:H, 6s7r:A, 6s7r:B, 6s7r:C, 6s7r:D, 6s7r:E, 6s7r:F, 6s7r:G, 6s7r:H, 6s7r:I, 6s7r:J, 6s7r:K, 6s7r:L, 6s7r:M, 6s7r:N, 6s7r:O, 6s7r:P, 8xmh:A, 8xmh:B, 8xmh:C, 8xmh:D, 8xmh:E, 8xmh:F, 8xmh:G, 8xmh:H, 8xmi:A, 8xmi:B, 8xmi:C, 8xmi:D, 8xmi:E, 8xmi:F, 8xmi:G, 8xmi:H
17 8bjp:AAA 109 28 0.0593 0.1284 0.5000 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218