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BioLiP
>protein
SMRKTIERLLNSELSSNSIAVRTGVSQAVISKLRNGKKELGNLTLNSAEKLFEYQKEMEKVDTWIVYRGRTADMNKSYIA
EGSTYEEVYNNFVDKYGYDVLDEDIYEIQLLKKLEDYDYRELFENSSSQVYYHEFEITHE

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jfu:C 140 140 1.0000 1.0000 1.0000 1.01e-99
2 8jfu:B 171 171 1.0000 0.8187 0.8187 2.64e-92 8jfr:B, 8jfr:D, 8jfr:A, 8jfr:C, 8jft:C, 8jfu:D, 8jfu:A, 8jg9:C, 8jg9:F
3 5o7h:B 129 69 0.1286 0.1395 0.2609 0.94
4 5o6u:B 182 69 0.1286 0.0989 0.2609 1.1
5 8cej:A 449 98 0.1786 0.0557 0.2551 3.3 8cej:B, 8cej:C, 8cej:D, 8cek:A, 8cek:B, 8cek:C, 8cek:D
6 8fpj:A 1345 73 0.1571 0.0164 0.3014 3.3
7 2xmo:A 409 83 0.1429 0.0489 0.2410 3.6 2xmo:B
8 7odr:M 291 52 0.0929 0.0447 0.2500 4.2 7a5f:M3, 7a5g:M3, 7a5h:M, 7a5i:M3, 7a5j:M, 7a5k:M3, 5aj4:BP, 8any:M, 6gaw:BP, 6gb2:BP, 6i9r:M, 3j7y:M, 3j9m:M, 8k2a:LO, 8k2b:LO, 7l08:M, 7l20:M, 7nqh:BP, 7nql:BP, 7nsh:BP, 7nsi:BP, 7nsj:BP, 6nu2:M, 6nu3:M, 7o9k:M, 7o9m:M, 7ods:M, 7odt:M, 7of0:M, 7of2:M, 7of3:M, 7of4:M, 7of5:M, 7of6:M, 7of7:M, 7og4:XM, 7oi7:M, 7oi8:M, 7oi9:M, 7oia:M, 7oib:M, 7oic:M, 7oid:M, 7oie:M, 8oin:BT, 8oiq:BT, 8oir:BT, 8oit:BT, 5ool:M, 5oom:M, 7pd3:M, 8pk0:M, 7qh6:M, 7qh7:M, 7qi4:M, 7qi5:M, 7qi6:M, 8qsj:M, 8qu1:M, 8qu5:M, 4v19:P, 6vlz:M, 6vmi:M, 8xt0:LO, 8xt1:LO, 8xt2:LO, 8xt3:LO, 6ydp:BP, 6ydw:BP, 6zm5:M, 6zm6:M, 6zs9:XM, 6zsa:XM, 6zsb:XM, 6zsc:XM, 6zsd:XM, 6zse:XM, 6zsg:XM
9 7po4:M 269 52 0.0929 0.0483 0.2500 4.3 7oi6:M
10 1ko7:A 285 42 0.1000 0.0491 0.3333 4.5 1ko7:B
11 7ok0:B 1109 53 0.1429 0.0180 0.3774 8.1 7oq4:B, 7oqy:B
12 7udm:B 281 43 0.1071 0.0534 0.3488 8.4 7udl:A, 7udm:A
13 7udm:B 281 43 0.1071 0.0534 0.3488 8.4 7udl:A, 7udm:A
14 7udm:B 281 43 0.1071 0.0534 0.3488 8.4 7udl:A, 7udm:A
15 6lty:A 78 28 0.1000 0.1795 0.5000 9.8 6lty:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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