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BioLiP
>protein
SMRKTIERLLNSELSSNSIAVRTGVSQAVISKLRNGKKELGNLTLNSAEKLFEYQKEMEKVD

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jfu:C 140 62 1.0000 0.4429 1.0000 2.92e-38
2 8jfu:B 171 62 1.0000 0.3626 1.0000 4.76e-38 8jfr:B, 8jfr:D, 8jfr:A, 8jfr:C, 8jft:C, 8jfu:D, 8jfu:A, 8jg9:C, 8jg9:F
3 1ko7:A 285 44 0.2258 0.0491 0.3182 0.38 1ko7:B
4 6f92:A 760 48 0.2419 0.0197 0.3125 1.3 6f91:A, 6f91:B, 6f91:C, 6f91:D, 6f91:E, 6f91:F, 6f91:G, 6f91:H, 6f92:B, 6f92:C, 6f92:D
5 7lgu:A 680 24 0.1935 0.0176 0.5000 2.0 7lgu:B, 7lgw:A, 7lgw:B, 7lh2:A, 7lh2:B
6 6lty:A 78 28 0.2258 0.1795 0.5000 3.3 6lty:B
7 5jm6:A 445 21 0.1774 0.0247 0.5238 7.3 5jm6:E, 5jm6:F, 5jm6:B, 5jm6:C, 5jm6:D
8 6mkh:A 445 41 0.2419 0.0337 0.3659 7.8 6bsr:A, 6mki:A
9 8des:A 475 25 0.1452 0.0189 0.3600 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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