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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLP
HGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA
AEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV
SAKVSEALEKRYSMTEHKRQVPASMFDDWWK

The query sequence (length=271) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ee1:A 271 271 1.0000 1.0000 1.0000 0.0 1fyd:A, 1ih8:A, 1kqp:A, 1kqp:B, 1nsy:A, 1nsy:B, 2nsy:A, 2nsy:B
2 1ee1:B 246 271 0.9077 1.0000 0.9077 3.80e-176 1ifx:A, 1ifx:B
3 2pz8:A 280 271 0.7786 0.7536 0.7786 1.23e-157 2pz8:B, 2pza:A, 2pza:B
4 6c8q:A 268 274 0.5978 0.6045 0.5912 1.18e-102 6c8q:B, 6c8q:C, 6c8q:G, 6c8q:D, 6c8q:F, 6c8q:E, 6c8q:H
5 5huh:A 261 274 0.5387 0.5594 0.5328 1.94e-95 5huh:B
6 3hmq:A 262 274 0.5351 0.5534 0.5292 1.60e-93
7 1wxi:A 261 274 0.5166 0.5364 0.5109 2.47e-91 1wxe:A, 1wxg:A, 1wxh:A
8 3q4g:A 266 277 0.5314 0.5414 0.5199 7.37e-87
9 5f23:A 263 269 0.4465 0.4601 0.4498 1.37e-69
10 3fiu:A 238 246 0.3542 0.4034 0.3902 1.98e-40 3fiu:B, 3fiu:C, 3fiu:D
11 2e18:A 256 247 0.3137 0.3320 0.3441 1.74e-34 2e18:B
12 1xng:B 262 216 0.2546 0.2634 0.3194 5.12e-19 1xng:A
13 6ofb:A 696 281 0.2546 0.0991 0.2456 1.93e-12 6ofb:B
14 5kha:A 526 279 0.2841 0.1464 0.2760 4.19e-09 5kha:B
15 6ofc:B 669 180 0.1845 0.0747 0.2778 0.098 3dla:A, 3dla:D, 3dla:C, 6ofc:A, 6ofc:D, 6ofc:C, 3seq:A, 3seq:B, 3sez:A, 3sez:B, 3syt:A, 3syt:B, 3syt:C, 3szg:A, 3szg:D, 3szg:C
16 3seq:D 650 178 0.1808 0.0754 0.2753 0.33 3dla:B, 3seq:C, 3sez:D, 3sez:C, 3syt:D, 3szg:B
17 6agz:A 386 78 0.0849 0.0596 0.2949 0.39 6agz:B
18 6jp9:A 298 203 0.1845 0.1678 0.2463 0.50 6jp9:B, 6jp9:C, 6jp9:D
19 4i8p:A 500 74 0.0849 0.0460 0.3108 1.4 4i8p:B
20 1qs0:A 407 53 0.0627 0.0418 0.3208 1.5
21 1ldc:B 382 43 0.0554 0.0393 0.3488 2.5
22 5tw7:F 490 60 0.0738 0.0408 0.3333 4.7 5tw7:E
23 3vbe:C 329 38 0.0590 0.0486 0.4211 4.9 3vbe:A, 3vbe:B, 3vbe:D, 3vc3:A, 3vc3:B, 3vc3:C, 3vc3:D, 3vc3:E, 3vc3:F
24 1gvr:A 364 100 0.0886 0.0659 0.2400 9.8 2aba:A, 2abb:A, 3f03:K, 6gi7:A, 6gi8:A, 6gi9:A, 6gia:A, 1gvo:A, 1gvq:A, 1gvs:A, 1h50:A, 1h51:A, 1h60:A, 1h61:A, 1h62:A, 1h63:A, 3kft:A, 3kft:B, 5lgx:A, 5lgz:A, 3p62:A, 3p67:A, 3p74:A, 3p7y:A, 3p80:A, 3p81:A, 3p82:A, 3p84:A, 3p8i:A, 3p8j:A, 1vyp:X, 1vyr:A, 1vys:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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